Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 90.9 bits (224), Expect = 6e-23
 Identities = 93/395 (23%), Positives = 157/395 (39%), Gaps = 43/395 (10%)

Query: 1   MSMAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWV--YRANINGKMQRIKLG 58
           M+  + D  +R    KP   +  +S   GL +RV P G  TW+  Y    + K   + LG
Sbjct: 4   MAKPLNDTEVR--QAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLG 61

Query: 59  EYPAMKLRDAIQARESRAELVELGFDPRKSTRSANDDSII----TLNDLIDYW------- 107
            YP + L DA +      +L+    DP++               T  ++   W       
Sbjct: 62  TYPELTLADARRKALDARKLIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKTE 121

Query: 108 -AENHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANL 166
             ENHA    +        F   + P +G+ P  Q+     + +F   + + S +    L
Sbjct: 122 ITENHAASTWRS-------FKLHVLPYIGSTPISQITAPMVIEIFRPIEAKGSLETVKRL 174

Query: 167 MTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHE 226
             R  +V++YAV  GL+  N L+ +K A    P   K +      +  L   +   SI  
Sbjct: 175 TQRLNEVMTYAVNTGLIHANPLSGIKAA-FKKPKKQKMAAMAPYELPELLSTLSRASIKR 233

Query: 227 SNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAE 286
             +  +   L    R NE   A+  +F+ + R+WT+P E  K++       R  + PL++
Sbjct: 234 VTRLLIEWQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMK-------REHVIPLSD 286

Query: 287 K---IIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGF-PRTTNHD 342
               I+ E  +I  +   +FP    +++    +NV     +     ++ +G   RTT H 
Sbjct: 287 ACMLILQELKSISGHREYLFP---ADRNPKTHSNVQTANAA-----LKRMGLQDRTTAHG 338

Query: 343 MRRTARNIWESMGVPYHVAETMLGHKVHTGVQSHY 377
           +R  A       G  + V E  L H     V+S Y
Sbjct: 339 LRALASTTLNEQGFDWDVVEAALAHTDKNQVRSAY 373