Pairwise Alignments

Query, 389 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Probable penicillin-binding protein DacB1 (D-alanyl-D-alanine carboxypeptidase) (DD-peptidase) (DD-carboxypeptidase) (PBP) (DD-transpeptidase) (serine-type D-ala-D-ala carboxypeptidase) (D-amino acid hydrolase) from Mycobacterium tuberculosis H37Rv

 Score = 87.4 bits (215), Expect = 6e-22
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 22/257 (8%)

Query: 30  PEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVAGQEMKRGNI---HAD 86
           P P  ++A  +++ D  +G V+   + H +  PAS+ K++ +  +   +         AD
Sbjct: 87  PAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTAD 146

Query: 87  DQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVAIAEHVAGSEGAF 146
           D              + +K+ +  G    +  L  GL++ SGNDA+ A+A  + G   A 
Sbjct: 147 DAA-----------VEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL 195

Query: 147 VSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALLGRAIIRDLPEIYPLYSELSFT 206
             + N  A +LG  ++  A P GLD P + ++ YDI L  R   ++ P    + +  +F 
Sbjct: 196 EKI-NLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PVFADIVATRTFD 253

Query: 207 YNGITQHNRNGLLRDRSMNVD-----GMKTGYTSGAGYSLASSATSGEMRLISVVM-GSK 260
           + G   H    L  D  +  +     G KTGYT  AG +   +A     RL++V++ G++
Sbjct: 254 FPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTR 313

Query: 261 SVKSREAESKQLLSYGF 277
                  ++  LL YGF
Sbjct: 314 QPIPPWEQAAHLLDYGF 330