Pairwise Alignments

Query, 389 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., D-alanyl-D-alanine endopeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.1 bits (196), Expect = 8e-20
 Identities = 63/252 (25%), Positives = 121/252 (48%), Gaps = 22/252 (8%)

Query: 34  QLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVAGQEMKRGNIHADDQVRISN 93
           ++AAN  +++D  T ++L   N       AS+TKLMT+ V         +  D+++ I+ 
Sbjct: 51  EVAANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLD----AKLPMDEKLTINI 106

Query: 94  NAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSW 153
               +     S+  + +G+ ++  ++    ++ S N A+ ++A H  G   AF+  MN+ 
Sbjct: 107 KDTKEMRGVYSR--VRIGSEISRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAK 164

Query: 154 AQQLGMNNSSFANPHGLDNPALYSTPYDIALLGRAIIRDLPEIYPLYSELSFTYN----- 208
           A+ LGM NS F  P GL    + S+  D+ +L +A      + YP+  +LS T       
Sbjct: 165 AKALGMKNSRFVEPTGLSAKNV-SSARDLVVLLKA-----SQGYPMLGQLSSTEKKTVTF 218

Query: 209 -----GITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVK 263
                 +   N N L+   + ++   KTG+T+ AG+ L       + ++  VV+ +K   
Sbjct: 219 GKPKYSLDFRNTNRLVYKDNWDIHLTKTGFTNAAGHCLVMRTEMAKRKVAFVVLDAKGKY 278

Query: 264 SREAESKQLLSY 275
           +  A++ +L ++
Sbjct: 279 THMADANRLRNW 290