Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  232 bits (592), Expect = 3e-65
 Identities = 167/633 (26%), Positives = 302/633 (47%), Gaps = 29/633 (4%)

Query: 19  SVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVKSRYEAVSRGAN 78
           ++V+ V +S  +       +  RE + S    T   L    + L  W+  R   +   A 
Sbjct: 17  AIVMTVFLSFSLFNDHRQEASTREALHSNLQATGQLLG---ANLGSWLAGRILLIEGAAE 73

Query: 79  LFTPELSDTDNLNKVRLLAEAAQITNVIAAY---EDGRSYMSMDKEGGVTTNRFKFTDRD 135
                 +  D +++V  L++       IA+Y   ED R ++  ++   V  + +    R 
Sbjct: 74  TVAAHPTP-DTISRV--LSQDIITKTFIASYVGLEDSRFFIHPER---VMPDGYDVRQRS 127

Query: 136 WYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLDDIITQVSNMR 195
           WY+ A     P LTE Y        +++  +PI   G+ VG L     L+ +   ++ + 
Sbjct: 128 WYKDAARTLQPVLTEPYIGAGIDYLIMTQAAPIKVNGKAVGVLGASLSLEQLAKIINAVD 187

Query: 196 FAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHR-----QESGHLSFPY 249
             G G A L   +       D   + +T +Q  P   E     +R     QE+G      
Sbjct: 188 LNGIGYAFLVSDDGKILVHPDSTRVTQTLAQAFP---EGPPSINRALNEVQENGQARIVT 244

Query: 250 LGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIGISVGVIIFI 309
                   +  ++    ++W++ + VDK  A A +     +A+   ++ + + VG++  +
Sbjct: 245 --------FTPIDGLPSLHWSIGLSVDKDKAYAALHEFRTSALIATLIAMLVMVGLLGLL 296

Query: 310 INQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISD 369
           IN + +PL  + +A+  +A G GDLT+RL     D+   ++ GFNRF   +Q  + ++  
Sbjct: 297 INALMRPLRSMGLAMQSIADGEGDLTQRLHSLSRDEFGLMAAGFNRFVERIQQSIREVLA 356

Query: 370 ATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITEA 429
           ++  ++    Q+SQ +  + +   + ++ T  V TAI ++  +A+ +A S   ++     
Sbjct: 357 SSIQLTQLASQVSQASNSSLKSSDTQAALTHNVATAINELGAAAQEIARSAAHASSRASD 416

Query: 430 ASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLL 489
                ++   +V  ++S ++ L + V N  + I ++N    KI  +L VI  IS+QTNLL
Sbjct: 417 TRDRTREGQSVVQQSISAMSQLSSQVVNTRQDIESLNEKTLKIGRILDVIKGISDQTNLL 476

Query: 490 ALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERT 549
           ALNAAIEAARAG+ GRGFAVV+DEVR LA RTQ S  EI  M+  L     + V AM  +
Sbjct: 477 ALNAAIEAARAGDAGRGFAVVSDEVRTLAHRTQQSAQEIHGMIEALQANAGNAVSAMLES 536

Query: 550 KQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIV 609
           ++      +        L+ +   + +ID+++  +A ATE+Q++V   L R++  I ++ 
Sbjct: 537 QRYSDDNVNTAKLAGERLDRVLLGIGEIDEINLSVATATEEQTSVVDNLDRDISHINDLN 596

Query: 610 ESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
           + +V + + T+ A   L   +  L+Q+V  FK+
Sbjct: 597 QEMVGNLQSTLQACTELEDQSRRLQQMVNTFKI 629