Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  221 bits (564), Expect = 5e-62
 Identities = 136/364 (37%), Positives = 213/364 (58%), Gaps = 4/364 (1%)

Query: 278 ATALADVDVAVANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRR 337
           ATA+ D  V V   +     L+  +V + I +   I  P+        D+A  +GDLTR+
Sbjct: 181 ATAVYDHSVNVLMIVLIAAFLL--TVVLAIALTRSIVDPISASLKLAEDIA--AGDLTRQ 236

Query: 338 LEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSS 397
           L V+G+D+ +++    N  SGNL+  + +IS A+  +S++  +++   +  ++ L   +S
Sbjct: 237 LSVSGSDEASRLMTALNTMSGNLRTTIHEISGASAQLSTAAVEMTSITESADRTLQQQNS 296

Query: 398 ETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVEN 457
           E +Q  TA+ +MS +   VA + T ++Q  + +S  A      VN  ++ + +L   VE 
Sbjct: 297 EIEQAATAVNEMSAAVEEVARNATSTSQAAQQSSLSADLGNQRVNETLTAMQNLTGLVEG 356

Query: 458 MSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRAL 517
            S  ++ +   A  IS+VL VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRAL
Sbjct: 357 SSAQVTALAGQAQDISKVLGVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRAL 416

Query: 518 AARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDI 577
           A RTQ ST E+  M++ +  G+ + V +M ++ Q+   T     +   SL  ++ SV +I
Sbjct: 417 AHRTQTSTQEVEQMISAIQAGSSATVESMHKSTQEVHVTRKTAEDAGESLRQITDSVLEI 476

Query: 578 DDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLV 637
           ++ + QIAAA+EQQ+ VA ++ R+++SIR++        RQT+ A+  LS     L  LV
Sbjct: 477 NNRNLQIAAASEQQAHVARDVDRSLVSIRDLAVQSSEGTRQTLIASTELSQLAVNLNDLV 536

Query: 638 GKFK 641
            +FK
Sbjct: 537 LRFK 540