Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  233 bits (594), Expect = 2e-65
 Identities = 173/636 (27%), Positives = 298/636 (46%), Gaps = 32/636 (5%)

Query: 22  ILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYH------VSELEFWVKSRYEAVSR 75
           IL+  SL+V+    + +   + +       Q K N +         +  W+  R   V  
Sbjct: 11  ILLAASLVVIAAFTLFTFYNDYLQRNALHVQLKENLNQTSESTAGNIRNWLSGRILLVEN 70

Query: 76  GA-NLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSMDKEGGVTTNRFKFTDR 134
            A N  +P+     N    R+L +   I   ++ Y+       + +     +  +    R
Sbjct: 71  LAENASSPQSPQEQN----RVLGQPTLIATFMSIYQGRSDGSFVTQPPDDMSADYDPRTR 126

Query: 135 DWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLDDIITQVSNM 194
            WY  A       LTE Y D VT   V++  +PI       G + GD  L+ ++  +S++
Sbjct: 127 PWYVDALRAGKTILTEPYLDAVTKGLVVTLATPIKGDSGVSGVIGGDLSLEILVKMISSL 186

Query: 195 RFAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQESGHLSFPYLGIE 253
           R  G G A L D N       D + + +T ++V P      A   R         Y G  
Sbjct: 187 RMHGDGYAFLVDANGRILVHPDTSLVMKTLAEVYP------ANTPRLSQDLSESEYAGKT 240

Query: 254 FDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIGISVGVIIFIINQI 313
               +  V+    + W + V +DK  A A +     +AI   ++ + + + ++  +++ +
Sbjct: 241 QILTFAHVDGLPSVNWYVGVAMDKDIAYAALGEFRNSAIVATVIAVVLIILLLGMLLSVL 300

Query: 314 YKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQI 373
            +PL  +  A+ D+A G GDLT+RL +   D+   +  GFN F       + +I D+ + 
Sbjct: 301 LRPLNLMGRAMHDIAAGEGDLTKRLVIESQDEFGHLGNGFNLF-------VERIHDSMRE 353

Query: 374 ISSSIEQLSQTA-----KENEQMLIS--HSSETDQVVTAITQMSESARTVAESVTQSNQI 426
           ++SS  QL++ A       N  ML S   S  T+ V  AI ++  + + +A++  +++  
Sbjct: 354 VASSTVQLNEVALRVLNASNSSMLNSDQQSHRTNSVAAAINELGAATQEIAQNAARASGH 413

Query: 427 TEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQT 486
           +  A   A     +V   +  ++ L   + + S  I  +N     I ++L VI  IS+QT
Sbjct: 414 SSDARTLASDGQDVVGQNIEAMSRLSKRISSASGQIETLNTKTANIGQILDVITGISQQT 473

Query: 487 NLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAM 546
           NLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ S +++ +M+ +L  G    V  M
Sbjct: 474 NLLALNAAIEAARAGEAGRGFAVVADEVRSLAHRTQESASQVQEMIEQLQSGAREAVSIM 533

Query: 547 ERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIR 606
             ++++   T    ++   SL  ++  + +ID ++  +AAATE+Q+ V   ++ ++  I 
Sbjct: 534 NDSQRESVETVGIANKAVASLEHVTERIGEIDGMNQSVAAATEEQTAVVEAINVDITEIN 593

Query: 607 EIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
            + +  V +   T+ A   L   +  L QLVG F++
Sbjct: 594 TLNQQGVENLNATLRACTDLEQQSTRLTQLVGSFRI 629