Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  211 bits (538), Expect = 5e-59
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 7/368 (1%)

Query: 278 ATALADVDVAVANAITTGIV---LIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDL 334
           A A AD+  +    +  G+V   L+ I +GV+I     I +PL     +   +A   GDL
Sbjct: 207 AAAAADLKASSVLMLEIGVVIAFLVAIMLGVLI--TRMITRPLAVAVASAQRIA--GGDL 262

Query: 335 TRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLIS 394
           T+ +     D+  Q+    +   G L+N + QI+ A+  ++S+ E+LS    E+ + L  
Sbjct: 263 TQPIVSTSGDEAGQLLNALSDMQGGLKNTIQQIASASDQLASAAEELSAVTDESTRGLTR 322

Query: 395 HSSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVND 454
            + E  Q  TA+ QM+ +   VA +   +++ +++A+ +A      V++ V  +T++V++
Sbjct: 323 QNDEIQQAATAVNQMTAAVEEVARNAVSTSEASKSATDDAVDGRGQVDHTVKGITTMVHE 382

Query: 455 VENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEV 514
           +   + ++S +     +IS+VL VI +I+EQTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 383 ITASTGAVSELAGHVREISKVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 442

Query: 515 RALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASV 574
           RALA RTQ ST EI  M++ +  G D  V AM ++      T +       +L  ++  V
Sbjct: 443 RALAHRTQASTVEIEGMISTVQSGADGAVAAMGKSLSLATNTQELALRAGAALEKITLGV 502

Query: 575 SDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELE 634
           + I++ +  IA+A+E+Q+ VA E+ RN+++I+++         QT  +++ LS       
Sbjct: 503 ATINERNLVIASASEEQAQVAREVDRNLINIQDLSTQSAAGANQTSASSQELSRLATSFN 562

Query: 635 QLVGKFKL 642
            LV  FKL
Sbjct: 563 SLVANFKL 570