Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (570), Expect = 1e-62
 Identities = 125/364 (34%), Positives = 211/364 (57%), Gaps = 2/364 (0%)

Query: 279 TALADVDVAVANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRL 338
           +A  + D AV   +T  ++++ + +   I I  QI +PL    +A   +A G  DLT  L
Sbjct: 281 SANKEKDSAVTQLLTVAVIVLLLGIFAAILITRQITRPLDSTVIAARRIADG--DLTNDL 338

Query: 339 EVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSE 398
                D+L  +       + +L+ ++  IS+    I+++ E+LS  +++    +     E
Sbjct: 339 STTRQDELGLLQNTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLE 398

Query: 399 TDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENM 458
            DQV TA+ QM+ + + VA++   ++Q    AS  A     +V +A   ++ L  +V  +
Sbjct: 399 VDQVATAMNQMASTVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQL 458

Query: 459 SESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 518
            E++  + +D++KI  V+ VI A++EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA
Sbjct: 459 GEAMQRLIQDSDKIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 518

Query: 519 ARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDID 578
            RTQ+STTEI  ++  L +GT +    M  ++Q+ + T     +   SL  ++ S+  I+
Sbjct: 519 QRTQSSTTEIEALIKSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIE 578

Query: 579 DLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVG 638
            +S QI+AA E+QS V  E++R+++S+R+I +    +  Q+  +T  L+     L+ +V 
Sbjct: 579 QMSQQISAAAEEQSAVTDEINRSVISVRDIADQSATATEQSAASTVELARLGSNLQDMVA 638

Query: 639 KFKL 642
           +F++
Sbjct: 639 RFRI 642



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 58/306 (18%), Positives = 115/306 (37%), Gaps = 53/306 (17%)

Query: 336 RRLEVNGNDDL-AQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLIS 394
           R++  +  D L AQ+    N+        + +   A Q   S +  +SQ  ++N+Q+  S
Sbjct: 200 RQITFDAADSLIAQVGSARNQLPNKAGPAVDEALAALQQYKSLMVSISQLMQQNDQIRDS 259

Query: 395 HSSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVND 454
              ++  +VT+      + + +A  V  +N+  ++A  +     VIV             
Sbjct: 260 LRQQSMDIVTS------AEKLMAGQVVSANKEKDSAVTQLLTVAVIV------------- 300

Query: 455 VENMSESISNMNRDANKISEVLSVIGAISEQTNLL-ALNAAIEAARAGEQGRGFAVVADE 513
                               +L +  AI     +   L++ + AAR    G       D 
Sbjct: 301 -------------------LLLGIFAAILITRQITRPLDSTVIAARRIADG-------DL 334

Query: 514 VRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSAS 573
              L+   Q+    + + +  +     +++G +     Q  T A++ S VS      SA 
Sbjct: 335 TNDLSTTRQDELGLLQNTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVS---EQTSAG 391

Query: 574 VSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHEL 633
           V+       Q+A A  Q ++   E+++N     +       S R   G++  + H+  E+
Sbjct: 392 VTQQKLEVDQVATAMNQMASTVQEVAQNTEDASQAARQ--ASDRAAHGSS-VVQHATREI 448

Query: 634 EQLVGK 639
            QL G+
Sbjct: 449 SQLAGE 454