Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  222 bits (566), Expect = 3e-62
 Identities = 128/351 (36%), Positives = 208/351 (59%), Gaps = 5/351 (1%)

Query: 292 ITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISE 351
           +   +++  ++  VI  +I    +  L+L   V D     GDLT    V   D+L Q+  
Sbjct: 274 LIAALIMSALAAWVITNLIVGPLRDTLKLAERVAD-----GDLTHNQVVTRKDELGQLQG 328

Query: 352 GFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSE 411
              R +GNL+ ++  + D    I+S+ EQLS   ++    + S  +ETDQV TA+ +MS 
Sbjct: 329 SMMRMTGNLRELIGGLRDGVTQIASAAEQLSAVTEQTSAGVNSQKNETDQVATAMHEMSA 388

Query: 412 SARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANK 471
           + + VA +  Q++     ASKEA++   +V+ AV+ +  L  +V +   ++ ++  ++NK
Sbjct: 389 TVQEVARNAEQASHAAVNASKEAREGDGVVSKAVAQIEKLATEVTHSKSAMDDLKNESNK 448

Query: 472 ISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDM 531
           I  VL VI A++EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ ST EI+ +
Sbjct: 449 IGGVLDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQTSTEEIAAL 508

Query: 532 LTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQ 591
           ++ L   T  V   ++ ++     + + T     S+N M+ ++S I+ ++ QIAAA E+Q
Sbjct: 509 ISGLHTRTAQVATILDNSQALTANSVELTRNAGVSINNMTQAISTIETMNHQIAAAAEEQ 568

Query: 592 STVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
           S VA E++R++L++R+I E    +  +T  ++  L+     L+ LV +F++
Sbjct: 569 SAVAEEINRSVLNVRDISEQTASASEETAASSVELARLGVHLQSLVSRFRV 619