Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  216 bits (549), Expect = 3e-60
 Identities = 130/381 (34%), Positives = 218/381 (57%), Gaps = 14/381 (3%)

Query: 271 LMVFVDKATALADVDVAVANAITTGIVLIGISVGVIIFII-------NQIYKPLLRLKVA 323
           L  F +K  ALA V         +G+ ++   +G+IIF+          + K +     +
Sbjct: 164 LTQFNNKGAALAGVQAT--QVYDSGLYIV---IGLIIFVALLTLCLATLLTKTITSPIGS 218

Query: 324 VLDLAQ--GSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQL 381
            L +A+   S DLT+ +EV+G D+  ++         NL++ ++QI+D++  ++++ E++
Sbjct: 219 ALSVAERIASSDLTKEVEVSGTDEAGRLLSALATMQQNLRSTIMQIADSSSQLAAASEEM 278

Query: 382 SQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIV 441
           +   +++   L+S + E +Q  TA+T+MS +   VA +   +++ +       +  L  V
Sbjct: 279 TAVTEQSSLGLVSQNDEVNQAATAVTEMSAAVDEVARNAESASEESRKGQGYTEVGLERV 338

Query: 442 NNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAG 501
           +  + ++  L ++V + SE I+ ++  A  IS+V+ VI AI+EQTNLLALNAAIEAARAG
Sbjct: 339 SQTLKSIEKLSSNVRDTSEQITGLSNRAQNISKVVEVIRAIAEQTNLLALNAAIEAARAG 398

Query: 502 EQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTS 561
           EQGRGFAVVADEVRALA RTQ ST EI  M+  +   +D  V AM  +++    +     
Sbjct: 399 EQGRGFAVVADEVRALAHRTQVSTQEIEQMIQAIQNDSDQAVKAMATSRELAAESLSVAG 458

Query: 562 EVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVG 621
           + S SL+ ++ +++ I++ +  IA A+E+Q+ VA E+ RN++SIRE+         QT  
Sbjct: 459 DASSSLDQIATAITGINERNILIATASEEQAHVAREVDRNLVSIRELASQSSAGASQTAS 518

Query: 622 ATESLSHSNHELEQLVGKFKL 642
           A   +S     L QLV +FK+
Sbjct: 519 ACNEMSKLAVSLNQLVNRFKV 539