Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  230 bits (587), Expect = 1e-64
 Identities = 164/643 (25%), Positives = 292/643 (45%), Gaps = 25/643 (3%)

Query: 8   MTLGFKGRIYASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVK 67
           M L F+ +I  +   +V ++  +    N    ++ +  +L +          S ++ W+ 
Sbjct: 1   MNLKFRHKILLAAAGVVVLAFALFTLYNDYLQRKTINQNLESSVGQAGQLTASSVQNWLS 60

Query: 68  SRYEAVSRGAN--LFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSMDKEGGVT 125
            R   +        F    SD   L     L    Q T V  +        ++D   G  
Sbjct: 61  GRILVLENLTQNVAFQGVNSDLSGLVSQSALVSTFQFTYVGDSKGTFTQRPNVDMPAGYD 120

Query: 126 TNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLD 185
             +     R WY+         L+  Y   V G  V++  SP+   GQ  G + GD  LD
Sbjct: 121 PRQ-----RPWYKSTVDAGKTILSAPYLASVGGL-VVTIASPVKAAGQVTGVVGGDLSLD 174

Query: 186 DIITQVSNMRFAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQESGH 244
            ++  ++++ F G G A L   +     S D   + +    + P            ++  
Sbjct: 175 TLVKIINSVEFGGLGYAFLVSGDGQIIVSPDKEQVMKNLKDIYPG-----------QTIS 223

Query: 245 LSFPYLGIEFDGYYKRVNLTD-----DMYWTLMVFVDKATALADVDVAVANAITTGIVLI 299
           L      +  +G  + ++ T         W + + +DK  A A +    ++A+   ++ +
Sbjct: 224 LDARLREVTLNGQQRLLSFTPITGLPSADWYIGLSIDKDKAYAPLSQFRSSAMVAVLIAV 283

Query: 300 GISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGN 359
            +   ++  +I  + +PL  +  A+ D+AQG GDLTRRL + G D+ A +   FN+F   
Sbjct: 284 AVIALLLSLLIRALMRPLTDMGRAMQDIAQGEGDLTRRLSIQGKDEFAALGGSFNQFVER 343

Query: 360 LQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAES 419
           +   ++++S AT  +    +++  ++  +       S+ T+ V  AI ++  + + +A +
Sbjct: 344 VHASIVEVSSATLQVHDLSQRVVNSSNSSIVGFDEQSARTNNVAAAINELGAATQEIARN 403

Query: 420 VTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVI 479
            + ++     A  +A+   V+V   +  +++L   + +    I  +N     I  +L VI
Sbjct: 404 ASDASIQASEARNQAEDGQVVVEKTIHAMSALSAKISDSCTQIEQLNASTENIGHILDVI 463

Query: 480 GAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGT 539
             IS+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ S  EI  M+  L  G+
Sbjct: 464 KGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQTSADEIHKMIGSLQSGS 523

Query: 540 DSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELS 599
              V  M  ++   Q + +  ++    L  ++  + DID ++  +AAATE+Q+ V   L+
Sbjct: 524 QHAVLNMNESQTSSQESVEVANQAGSRLRDVTRRIGDIDGMNQSVAAATEEQTAVVETLN 583

Query: 600 RNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
            ++  I  + +  V +  +T+    +LS     L+QLV  FK+
Sbjct: 584 IDINQINTLNQQGVANLNETLKDCAALSQQAGRLKQLVDSFKI 626