Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  229 bits (584), Expect = 3e-64
 Identities = 136/382 (35%), Positives = 225/382 (58%), Gaps = 7/382 (1%)

Query: 261 VNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIGISVGVIIFIINQIYKPLLRL 320
           V +++DMY   +   D+ +A A         IT  ++ I + +   + I  QI +PL R 
Sbjct: 266 VKISEDMYKLQLDRRDQESAQART-----TQITCTLLAIILGIIAAVIITRQITRPL-RE 319

Query: 321 KVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQ 380
            +AV+D    SGDLT+ L V  +D+L  + +G  R    L+ ++  I D+   I+S+ E+
Sbjct: 320 TLAVVDRI-ASGDLTQTLAVTRSDELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEE 378

Query: 381 LSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVI 440
           LS   ++    + S   ETDQV TA+ +MS +   VA +  Q++Q    A +EA+    +
Sbjct: 379 LSAVTEQTSAGVNSQKVETDQVATAMHEMSATVAEVARNAEQASQAASNADREARDGDKV 438

Query: 441 VNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARA 500
           V  A++ +  L N+V    ++++ + ++++KI +V+ VI A++EQTNLLALNAAIEAARA
Sbjct: 439 VGEAIAQIERLANEVGRSVDAMTELEQESDKIGKVMDVIKAVAEQTNLLALNAAIEAARA 498

Query: 501 GEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKT 560
           GE GRGFAVVADEVR LA RTQ ST EI  ++  L  GT  V   M  +++   ++   +
Sbjct: 499 GEAGRGFAVVADEVRGLAQRTQQSTVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLS 558

Query: 561 SEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTV 620
            +   SL  ++ +VS I  ++ QIAAA E+QS VA E+SR+++++R++ E    +  +T 
Sbjct: 559 RQAGTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETA 618

Query: 621 GATESLSHSNHELEQLVGKFKL 642
            ++  L+    +L+ +V +F++
Sbjct: 619 ASSVELARLGGQLQTMVSRFRI 640