Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  223 bits (569), Expect = 2e-62
 Identities = 130/365 (35%), Positives = 215/365 (58%), Gaps = 9/365 (2%)

Query: 276 DKATALADVDVAVANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLT 335
           D A ++  +  A A A+  GI+   +       I  QI  PL      V  +A  SGDL+
Sbjct: 281 DSAKSVQMIIAATALAMVLGILAAWV-------ITRQITTPLQETLEVVERVA--SGDLS 331

Query: 336 RRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISH 395
           R L V+  D+L ++     R + +L+ ++  I D    I+S+ E+LS   ++    + S 
Sbjct: 332 RNLNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQ 391

Query: 396 SSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDV 455
             ETDQV TA+ +M+ + + VA +  ++++   AA ++A+    +VN A++ +  L + V
Sbjct: 392 KVETDQVATAMHEMTATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAV 451

Query: 456 ENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 515
            N SE++  + ++++KI  VL VI +++EQTNLLALNAAIEAARAGE GRGFAVVADEVR
Sbjct: 452 GNSSEAMGALKQESDKIGSVLDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVR 511

Query: 516 ALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVS 575
           +LA RTQ ST EI  ++ +L  GT      M+ +++   ++ + T    GSL  ++ +VS
Sbjct: 512 SLAQRTQKSTEEIEALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVS 571

Query: 576 DIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQ 635
            I  ++ QIAAA E+QS  A E++R+++++R++ E    +  +T  ++  L+   + L+ 
Sbjct: 572 SIQAMNQQIAAAAEEQSATAEEINRSIINVRDVSEQTSAASEETAASSVELARLGNHLQV 631

Query: 636 LVGKF 640
           LV +F
Sbjct: 632 LVSRF 636