Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  215 bits (548), Expect = 4e-60
 Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 2/363 (0%)

Query: 280 ALADVDVAVANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLE 339
           AL D++ A    +   ++ I ++V +   ++  + + L  +  A+  LA  SGDLT +L+
Sbjct: 313 ALNDINSASLRTLILVVIAIVVAVVISFAVVRPLKRSLDEVNGALNVLA--SGDLTHKLD 370

Query: 340 VNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSET 399
             G+D+ A++S   NR   +L++++  I D +  ++++ E+ S    +    +    S+ 
Sbjct: 371 DTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQTTIGIQEQKSQV 430

Query: 400 DQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMS 459
           DQV TA T++S SA  V  S   +    + A +E Q    I +    T+ SL ++V   S
Sbjct: 431 DQVATATTELSSSAHQVNMSADDALSQIKQADEETQHMRTIADENKRTILSLADEVAKAS 490

Query: 460 ESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAA 519
           + I+ ++ D+  I  +L VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA+
Sbjct: 491 KVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAS 550

Query: 520 RTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDD 579
           RTQ+ST EI  M+  L +GT   V  M+  + Q Q+  +KT + + +L  +S SV    D
Sbjct: 551 RTQDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQALQTISHSVHKAYD 610

Query: 580 LSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGK 639
             T IA A ++Q+ V+ ++S  +  I  I E   +   QT  ++  ++    EL+  V +
Sbjct: 611 AGTHIAQAAQEQNLVSQQVSEKLEHIAAISEETALGAEQTAKSSHEVARLAEELQSSVKE 670

Query: 640 FKL 642
           F++
Sbjct: 671 FRV 673



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 62/301 (20%), Positives = 118/301 (39%), Gaps = 39/301 (12%)

Query: 348 QISEGFNR----FSG---NLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETD 400
           Q+S GFN      SG   N  N   Q+S     +SSS + L   +K   +      S+ +
Sbjct: 87  QLSSGFNNQFTLLSGLLNNRDNFQGQLSG----LSSSYQVLESNSKAMLKARFDSLSQQE 142

Query: 401 QVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAV-STVTSLVNDVENMS 459
           +++    ++  SA   + ++     + E++  + ++ +     A+ +T+T ++  V ++ 
Sbjct: 143 ELLKLREKLENSADDASSNLFDLIDL-ESSQNQTEREIAAAAGAIDTTMTGIITTVYDLV 201

Query: 460 ESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAA 519
            +            E  S    IS++ + +      +       G G  + AD V  L  
Sbjct: 202 AA------------EERSKYELISKELDYMLGEVKTKMEYISRHGEGI-IDADLVSTL-- 246

Query: 520 RTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGS----LNMMSASVS 575
                  + S  + K+LEG D++V    R     Q T++K + V  +       M     
Sbjct: 247 ------NDDSTKVLKMLEGKDTLVTLKSRQIDSTQLTSEKLTLVEKNALTVTEQMKRLAK 300

Query: 576 DIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQ 635
           DI+ ++  I+         +A L   +L +  IV ++V+S         SL   N  L  
Sbjct: 301 DIETVTNDISNQALNDIN-SASLRTLILVVIAIVVAVVISFAVVRPLKRSLDEVNGALNV 359

Query: 636 L 636
           L
Sbjct: 360 L 360