Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  217 bits (552), Expect = 2e-60
 Identities = 157/537 (29%), Positives = 269/537 (50%), Gaps = 25/537 (4%)

Query: 125 TTNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVT-GKKVI--SAVSPILHQGQFVGALLGD 181
           T N F   + +WY  AK  + P L E Y  ++T G  ++  S   PI+  G+F G +  D
Sbjct: 174 TLNEFGLREAEWYLCAKDTQKPCLMEPYLYEITPGNNMLMTSLTVPIVRGGRFRGVVGVD 233

Query: 182 FQL---DDIITQVSNMRFAGGAAT--LTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAG 236
             L     +I ++S   + G A    L+ K  +  AS            +  S      G
Sbjct: 234 LNLPVFQKMIEELSASLYQGQAKVTLLSTKGLIVAASHYDKKARPLGEAIDKSLANQILG 293

Query: 237 FHRQESGHLSFPYLGIEFDGYYKRVNLT-DDMYWTLMVFVDKATALADVDV------AVA 289
             + +   L+   + + +      +N+      W L + V +  ALA  +       A+A
Sbjct: 294 LGKGDGYLLNDSSMIVAYP-----INIPLSGSQWLLAIEVPRQIALASAEQVEGSMQAMA 348

Query: 290 NAITTGIVLIGISVGVIIFI-----INQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGND 344
            ++   ++L+GI +  +  I     I  +  P+ +++  V  LA   GDLT+ L+V+ + 
Sbjct: 349 ASLGRFVLLLGIGIAAVAVILIALFIRSVVAPIQQIQQRVSQLASAEGDLTQSLKVDEHA 408

Query: 345 DLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVT 404
           +L  +  GFN F G L  ++ ++        +  +  ++ A+E +Q +    SE + VVT
Sbjct: 409 ELIALGNGFNAFIGKLHGLISELKKVATESRNESQATARIAEETKQSVNRQYSEIESVVT 468

Query: 405 AITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISN 464
           A+ +MS +A  VA++  Q+   + A + + + S   +  AVS V+++  +      ++  
Sbjct: 469 AVNEMSHTAHEVAKASEQTASESAAMASQVKVSQDSLTQAVSLVSTMSKESLQAKIAVGK 528

Query: 465 MNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNS 524
           +   +  IS++L VI AI+ QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA++TQ S
Sbjct: 529 VAESSTNISKILEVISAIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQAS 588

Query: 525 TTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQI 584
           T +IS ++  L +      G +++     +    +T +   +L++M A +++I +  TQI
Sbjct: 589 TDDISRLIDALEQEVKGASGIIDKGVGLAEQAVAQTEQAFEALSVMVAGINEISNQVTQI 648

Query: 585 AAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFK 641
           A A E+QS V  E+SRN+  I +    L+    +   ++ESL+      E  + K +
Sbjct: 649 ATAAEEQSAVTEEVSRNITGISDSAAELMDLAGKARESSESLAKLVGRQESQLAKLR 705