Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  293 bits (750), Expect = 2e-83
 Identities = 192/555 (34%), Positives = 306/555 (55%), Gaps = 29/555 (5%)

Query: 112 GRSYMSMDKEGGVTTNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVTGK--KVISA----- 164
           G   +SM         +  +  RD    AKS+   F +  + +  TG+  + +SA     
Sbjct: 138 GMGGVSMGNSRDALDEKGNYYARDIVAAAKSKPIGFTSYFFSNPSTGQVEEKLSASFYFE 197

Query: 165 -VSPILHQGQFVGALLGDFQLDDIITQVSNMRFA-GGAATLTDKNAVFFASDDPNDIGRT 222
            ++ ++  G++V  L  D +L+  +  V   +F   G   + D +    A    + IGR 
Sbjct: 198 PLNLVIATGEYVSTLKQD-KLNSALQTVLAAKFGEDGHFWVQDSDGKILAHSQSSQIGR- 255

Query: 223 PSQVSPSFREMEAGFHRQESGHLSFPYLGIEFDGYYKRV----NLTDDMYWTL------- 271
              ++P+  + +     Q    ++ P    +      ++     +  +  W +       
Sbjct: 256 ---ITPNAAKAKQALGNQADAFVALPVTDPKTHSQETQIAYVRKILPEWGWVIGTGTYES 312

Query: 272 --MVFVDKATALADV--DVAVANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDL 327
                  + TA  +      +  +I    +LI I++   +F++N+I   ++ LK  +  L
Sbjct: 313 NISAIEQRLTAGTEAIFKQKIYRSIAIASLLIIIALAFCVFLLNKIIADMVMLKNRIDTL 372

Query: 328 AQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKE 387
           + G  DLT RL +   D+LA I    N F G LQ MML+IS A+Q I+  I QL   ++ 
Sbjct: 373 STGDADLTSRLAITSKDELAAIGHSVNSFIGYLQAMMLEISHASQKITQGIGQLDSHSEN 432

Query: 388 NEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVST 447
           N Q L  HSSET+ VVTAI+QM+ SA  VA+S  +    T  A++EA+ S + V++A  +
Sbjct: 433 NRQALSKHSSETELVVTAISQMNASADAVAQSAGKMAASTHQANEEAKTSTLTVSDAAGS 492

Query: 448 VTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGF 507
           V +L N++ + S+SI  M+ + N+I  VL VI  I++QTNLLALNAAIEAARAGEQGRGF
Sbjct: 493 VQALANEMNSASQSIHTMSENTNQIISVLGVIKEIADQTNLLALNAAIEAARAGEQGRGF 552

Query: 508 AVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSL 567
           AVVADEVR+LA+RTQ+ TT+I  +LT L    D+    M  T+  CQ     T+ V+ +L
Sbjct: 553 AVVADEVRSLASRTQSCTTQIEQILTTLRRDADTAEQLMLETQNSCQQVTQNTARVTSNL 612

Query: 568 NMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLS 627
             ++ S+++++DL  QIA+A+EQQS V AE+S+NM +I  + ++L+ +G+QT+ +T+SLS
Sbjct: 613 GAVTDSIAELNDLGGQIASASEQQSVVTAEISQNMHTIEAMAQTLLQNGQQTLESTQSLS 672

Query: 628 HSNHELEQLVGKFKL 642
            +N +L  +V KFKL
Sbjct: 673 AANQQLSAMVRKFKL 687