Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (562), Expect = 1e-61
 Identities = 129/364 (35%), Positives = 216/364 (59%), Gaps = 2/364 (0%)

Query: 280 ALADVDVA-VANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRL 338
           A++D + A V  +I   I++  + +G  + II  I +P+ R+  A+  + + + DLT R 
Sbjct: 258 AISDAESATVTISIVVFILITLVLIGFTLAIIRSIMEPVQRISDAISRI-EATKDLTLRC 316

Query: 339 EVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSE 398
           +   +D++ QI+  FN    + Q+++ ++  + ++++ S ++LS+ +    + +    +E
Sbjct: 317 DTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASEGVGRQLNE 376

Query: 399 TDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENM 458
           TD V TAIT+M  +   +A +   + +        AQQ  V V + +  + +L   + + 
Sbjct: 377 TDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDS 436

Query: 459 SESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 518
           ++ +S + +D+  I  VL VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA
Sbjct: 437 AQVVSELEKDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 496

Query: 519 ARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDID 578
            RTQ ST EI+ ++  L   T S+V  ME T++Q   +AD+ +     L  ++A V++I 
Sbjct: 497 MRTQESTEEIAGIIQTLQSRTRSIVQLMEATQRQGIESADQAASAGALLEQINADVTNIM 556

Query: 579 DLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVG 638
           D+STQIAAA E+QS VA+E+++N++ IR+I      +  +   A++ +      L Q V 
Sbjct: 557 DMSTQIAAAIEEQSMVASEVNKNVVVIRDIAAESAQAADENAKASDDVKARTQVLYQAVS 616

Query: 639 KFKL 642
            FK+
Sbjct: 617 LFKI 620