Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  213 bits (541), Expect = 3e-59
 Identities = 158/536 (29%), Positives = 260/536 (48%), Gaps = 23/536 (4%)

Query: 125 TTNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVTGKK---VISAVSPILHQGQFVGALLGD 181
           T   F   + +WY  AK  + P L E Y  +++      + S   P++  G F G +  D
Sbjct: 173 TLKEFGVREAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIGVD 232

Query: 182 FQL---DDIITQVSNMRFAGGAAT--LTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAG 236
             L     +I ++S   + G A    L+ K  V  AS            ++PS      G
Sbjct: 233 VNLPVFQKLIDELSASLYQGKAKVTLLSQKGLVVAASHYDKKARPLGESIAPSLASQLTG 292

Query: 237 FHRQESGHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDV------AVAN 290
            HRQ  G+L     G      Y          W+L++ V KA A    +       A+A+
Sbjct: 293 LHRQ-GGYLE---QGDNIIVAYPIEIPLAKAQWSLVIEVAKADAYQAANAMDKAMSAMAS 348

Query: 291 AITTGIVLIGISVGVII-----FIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDD 345
           ++ + ++++G+ V +I       +I  I  PL  ++  V +LA   GDLT+++ V  + +
Sbjct: 349 SLGSLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAE 408

Query: 346 LAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTA 405
           L  +  G N F   L+ ++ ++ +      +  +  ++ A++    +    S+ + VVTA
Sbjct: 409 LIALGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTA 468

Query: 406 ITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNM 465
           + +MS +A  VA++  Q+   TEA +   +     ++ A+  VT +  +     E++  +
Sbjct: 469 VNEMSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKV 528

Query: 466 NRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNST 525
              +  IS++L VI AI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA++TQ+ST
Sbjct: 529 AESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSST 588

Query: 526 TEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIA 585
            EI  ++  L    +S    +++     Q    +T     SLN +   + ++    T IA
Sbjct: 589 DEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIA 648

Query: 586 AATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFK 641
            A E+QS V  E+SRN+  I +    L     +   ++ SL+    +  Q +GK K
Sbjct: 649 TAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKLK 704