Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  396 bits (1017), Expect = e-114
 Identities = 233/643 (36%), Positives = 382/643 (59%), Gaps = 22/643 (3%)

Query: 10  LGFKGRIYASVVILVTISLMVLGTINMLSLKREMI----DSLTTETQNKLNYHVSELEFW 65
           +GFK  + AS+V LV + L++   ++ + +K   I    D LT  T+N+     +++  W
Sbjct: 1   MGFKKSLVASMVTLVALCLLISNWLSYVQIKEATIARVNDKLTGVTRNES----AKVATW 56

Query: 66  VKSRYEAVSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSM--DK--E 121
             ++ +A+   A  +       + +N  RL  + + +  +   ++DG +Y +   DK   
Sbjct: 57  FGAKAQAMDELARHYRLGSYQDNYVNTARLATDLSGVARIYFGFDDGSAYSTETGDKWLN 116

Query: 122 GGVTTNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGD 181
           G     ++    R WYQQ K+     +T+IY D  +G KVIS +  +       G +LGD
Sbjct: 117 GKAIPGKYDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISILKNLGD-----GVVLGD 171

Query: 182 FQLDDIITQVSNMRFAGGAATLTDKNAVFFASDDPNDIG--RTPSQVSPSFREMEAGFHR 239
            +L  +   VS + + G  A +TD+     AS+ P  +   R      P  ++   G   
Sbjct: 172 IELTYLHDVVSAIDYPGAVALITDQTGKVLASESPTLVSGSRFSDFGLPQVQQKIIG--- 228

Query: 240 QESGHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLI 299
            +     +   G++  G+ K + L +   W L + +DK+ A A VD A+ +A+ +  +++
Sbjct: 229 SDEVMQEYRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSAIML 288

Query: 300 GISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGN 359
             ++ +++ ++  +Y+P+L LK  V +L++G+GDLT+RLE++  DDL QIS G N+F  N
Sbjct: 289 LCAISILLGVLYLLYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQFIAN 348

Query: 360 LQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAES 419
           LQ MM ++  A+  IS S+E+L+   + N  +L +H+ ET+Q+V A+ +MS +A  VA++
Sbjct: 349 LQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDVAQN 408

Query: 420 VTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVI 479
            +++   T+  +++A  S  +V  A  TV  LV +VE+ ++ I  ++RD   I++VL VI
Sbjct: 409 GSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINITQVLKVI 468

Query: 480 GAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGT 539
           G I++QTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQ+ST EI + L+ L + +
Sbjct: 469 GDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLRDAS 528

Query: 540 DSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELS 599
           +S + +ME TKQ C  TA  T  V+  L+ + +SV+ I+DL+TQIA A E+QS+V+AE++
Sbjct: 529 NSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSAEIT 588

Query: 600 RNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
           RNM +I ++   L  SG  +   T +L+ +N +LEQ+VG+FKL
Sbjct: 589 RNMSAICDMANELARSGESSRNETVNLATANQQLEQIVGQFKL 631