Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  245 bits (626), Expect = 4e-69
 Identities = 184/648 (28%), Positives = 319/648 (49%), Gaps = 30/648 (4%)

Query: 10  LGFKGRIYASVVILVTISLMVLGTINMLSLKREMIDS--LTTETQNKLNYHVSELEFWVK 67
           L  K +I  +V + V +S +++G ++  S K E+++   LT+E  N L    +++E  + 
Sbjct: 6   LTIKQKILLTVTVAVLLSTVLVGVLSQRSAK-EVVEQRMLTSELPNTLQAIRNKVEMDIA 64

Query: 68  SRYEAVSRGAN-------LFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSMDK 120
           +   A  + A+       L     ++T+ L   +L     Q   V A+Y D ++     +
Sbjct: 65  TLMNAAEQLASSKMLKQWLVEGRPAETEPLVIAQLKDVQQQYKLVQASYADRQTAAYYTQ 124

Query: 121 EGGVTTNRFKFTDRD-WYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALL 179
           +G +   R    D+D W+   K+  +  +  ++ +     K+      I +Q      L+
Sbjct: 125 DGFL---RILTPDQDGWFFNYKNSGTERMLNVFTEANGEVKLF-----INYQQPNDRGLV 176

Query: 180 GDFQ-LDDIITQVSNMRFAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAG- 236
           G  + LDD++  + + +    G   L D         D + IG+       S   +  G 
Sbjct: 177 GLAKSLDDMVRLLKSFKIEDTGFVYLVDAKGDVKLHSDTSQIGKA------SLSSLYGGN 230

Query: 237 FHRQESGHLSFPYLGIEFDGYYKRV--NLTDDMYWTLMVFVDKATALADVDVAVANAITT 294
             R+      F     E DG    V  +    M W L+  V +A   A ++ +    +  
Sbjct: 231 VTRELLNKGDFGLTQTELDGETLLVASSYIPSMDWYLVAQVPRAEVFALLEESAYQILVW 290

Query: 295 GIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFN 354
            +++    +G+  F+   + +P+ ++   + D+ QG GDL +RL V GND+LAQ+++GFN
Sbjct: 291 TVLIAAAFIGLSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLAKGFN 350

Query: 355 RFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESAR 414
            F   +Q+ +++++D +  +S + + ++  A++ +        +T  VVTAI +M  +  
Sbjct: 351 SFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGATVH 410

Query: 415 TVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISE 474
            +A +  Q+    + A   +    ++V  A  T+  L  DVE +   I ++      I  
Sbjct: 411 EIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGS 470

Query: 475 VLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTK 534
           +L VI A+S+QTNLLALNAAIEAARAGE GRGFAVVA+EVR LA+RT  ST E+  M+  
Sbjct: 471 ILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDN 530

Query: 535 LLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTV 594
           L       V AM ++K + Q       E S +L  +S  +  I D++ Q+AAATE+QSTV
Sbjct: 531 LQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTV 590

Query: 595 AAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
             +++RN+  I EI +    + +    A++SL+   H L+ LV  FK+
Sbjct: 591 VEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGFKV 638