Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  239 bits (610), Expect = 3e-67
 Identities = 168/631 (26%), Positives = 304/631 (48%), Gaps = 15/631 (2%)

Query: 13  KGRIYASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVKSRYEA 72
           K +I  SVVI +++ + +L   +  S K  ++ +   + Q   +     ++ W+  R + 
Sbjct: 7   KQKILISVVIALSLVIGLLSWQSYSSQKSLLLQNSLEQVQRLGDQQAERIQEWLAGRQDI 66

Query: 73  VSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSMDKEGGVTTNRFKFT 132
           V   A+       + D+LN    L +A         Y   ++   +D +  +    +   
Sbjct: 67  VGALASKV-----EGDSLNA---LQQAQASGRFQLTYYGTQAGQMLDSDLSIDRTGYDPR 118

Query: 133 DRDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLDDIITQVS 192
            R WY+QA + R   LT+ Y D      V++    +       G + GD  +  ++  V+
Sbjct: 119 TRPWYKQATNERGLILTKPYVDVAYNVLVVTMAQAVSQ-----GVVGGDLSIASLVESVN 173

Query: 193 NMRF-AGGAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQESGHLSFPYLG 251
            M   A G A +  ++    A  D +   +  S +            RQ    L   +  
Sbjct: 174 RMTLPANGYAIMMHQDGTVIAYKDTSKAMKPVSDIDNDLNHNLPQQSRQAGTWLPMYFEH 233

Query: 252 IEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIGISVGVIIFIIN 311
              D     V++ +   W L++ +DK T  A +   +   +    V++ +SV  I +++N
Sbjct: 234 ESRDKLVWGVDIPNTD-WELVIVLDKETLEAPLTNLLLTQLGLSAVVLLLSVLAISWLVN 292

Query: 312 QIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDAT 371
            +  PL R+  A+  +A G+GDLT+R+EV+  D++  +++ FNRF G+   ++  I    
Sbjct: 293 LLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRHLA 352

Query: 372 QIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITEAAS 431
             + +  E   +T       L     E   V TA+T+M+ +   +A +   +    + ++
Sbjct: 353 GELDADAEHSLKTNHLAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSA 412

Query: 432 KEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLAL 491
             + Q   +VN   S++ SL ++V   +E I +++R A  IS +L+ I  I+EQTNLLAL
Sbjct: 413 ASSFQGKELVNKTRSSINSLADEVTQATEVIEDLSRHAQSISSILATIQGIAEQTNLLAL 472

Query: 492 NAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQ 551
           NAAIEAARAGEQGRGFAVVADEVR L+ RTQ+ST E+   +  L   T   V  ME ++ 
Sbjct: 473 NAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQM 532

Query: 552 QCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVES 611
               + +  +    +L  ++ +V+ I D++ QIA A E+Q+ V  E+++N ++I+++ + 
Sbjct: 533 LAGNSVEDANAAVKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDE 592

Query: 612 LVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
           +  + +  +   ++L    ++L   V  F L
Sbjct: 593 ITEAAKSDLTQAQALKARANDLNAQVATFIL 623