Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  242 bits (617), Expect = 4e-68
 Identities = 150/462 (32%), Positives = 242/462 (52%), Gaps = 8/462 (1%)

Query: 184 LDDIITQVSNMRFAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQES 242
           LDD++  + + +    G   L D         DP+ IG+T  +   S   + +  +R + 
Sbjct: 186 LDDMVQLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTSLKSLYSAANIGSLLNRSD- 244

Query: 243 GHLSFPYLGIEFDGYYKRV--NLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIG 300
               F  +  E  G    V  +    M W L+  V +A   A +  AV   +   +++  
Sbjct: 245 ----FNLIDTEIQGEKTFVASSYIPSMDWYLVAQVPEAEVFALLRDAVYQILIWTLIIAA 300

Query: 301 ISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNL 360
             + + I +   + +P+ ++     D+ +G GDL +RL VNG D++AQ+++GFN F   +
Sbjct: 301 GFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGFNSFISKI 360

Query: 361 QNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESV 420
           Q+ +++++  ++ +  S + +S  A++  +        T  VVTAI +M  +   +A + 
Sbjct: 361 QDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNA 420

Query: 421 TQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIG 480
            Q+    + A  E+    V+V  A  T+  L +DVE + E I ++      I  +L VI 
Sbjct: 421 AQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDVIR 480

Query: 481 AISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTD 540
           AISEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RT  ST E+  M+ KL     
Sbjct: 481 AISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEAS 540

Query: 541 SVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSR 600
             V AM +++ +         E S SL  +S  +  I D++ Q+AAATE+QSTV  +++R
Sbjct: 541 RAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDINR 600

Query: 601 NMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
           N+  I +I +    + +    A+ +L+   H L+ LV KFK+
Sbjct: 601 NVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642