Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  211 bits (536), Expect = 1e-58
 Identities = 183/663 (27%), Positives = 313/663 (47%), Gaps = 48/663 (7%)

Query: 6   GVMTLGFKGRIYASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFW 65
           G M  GF    Y    I  + + +V  T   L LKR+ ++ L      K N  +S +   
Sbjct: 64  GEMVAGFINEAYR---IPYSFAGIVESTAEELPLKRDRLE-LAIAAVLKKNTQISSMY-- 117

Query: 66  VKSRYEAVSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDG----RSYMSMDKE 121
             +++EA     N +    S+  N+N    +A +  +       +DG           ++
Sbjct: 118 --AQFEA-----NGYDGLDSEFLNVNVSHSVASSGVLEIYYTRNDDGTVEHHQVEDSSEK 170

Query: 122 GGVTTNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVT-GKKVISA---VSPILHQGQFVGA 177
              + N F   + +WY  AK    P L E Y  ++T G   +     VS + H+ QF+G 
Sbjct: 171 YKTSLNEFGIRESEWYLCAKETLKPCLMEPYLYEITPGNTALMTSLTVSAVKHK-QFIGV 229

Query: 178 LLGDFQL---DDIITQVSNMRFAGGAAT--LTDKNAVFFASDDPNDIGRTPSQVSPSFRE 232
           +  D  L     +I ++S   + G A    L+ +  V  AS            + P    
Sbjct: 230 VGVDVNLPVFQVLIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARPLAESIDPKLAV 289

Query: 233 MEAGFHRQESGHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVA----- 287
                H+      +   + + +       N      W+L + V K+ AL    +      
Sbjct: 290 QMIALHKNGGYMANDDEIIVAYPIDIPLANAE----WSLAIQVPKSMALKSSILLNEKMD 345

Query: 288 -VANAITTGIVLIGISVGV-----IIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVN 341
            +A ++ + +V++G++V +     I  +I  +  PL  ++  V +LA   GDLT+ +EV+
Sbjct: 346 DMATSLGSILVIVGLAVSILAVVTISIVIRSVIAPLRLIQGRVENLASADGDLTQSIEVD 405

Query: 342 GNDDLAQISEGFNRFSGNLQNMMLQI---SDATQIISSSIEQLSQTAKENEQMLISHSSE 398
            + +L  + +GFN F   L++++ ++   +  TQ  S S  ++++  +++         E
Sbjct: 406 SHAELIALGKGFNSFIHKLKDLISELKALAGQTQEESLSSAKIAELTRDSVHR---QYGE 462

Query: 399 TDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENM 458
            + VVTA+ +MS +A  VA++  Q+   TEA S+    S   +  A+  VT++  +    
Sbjct: 463 IESVVTAVNEMSATALEVAKASEQTAAETEAMSRNVHLSEESLTKAMDYVTTMSQESMQA 522

Query: 459 SESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 518
             ++S +   +  IS +L VI +I+ QTNLLALNAAIEAARAGEQGRGFAVVADEVRALA
Sbjct: 523 KVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 582

Query: 519 ARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDID 578
           ++TQ+ST +IS ++  L +   S    +++  ++ Q    +T +   SLN M + + +I 
Sbjct: 583 SKTQSSTDDISVLIDALQKEVQSASAIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEIS 642

Query: 579 DLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVG 638
              T IAAA E+QS V  E++RN+  I +    L     +   ++  L+    +  Q +G
Sbjct: 643 AQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLG 702

Query: 639 KFK 641
           K K
Sbjct: 703 KLK 705