Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  267 bits (682), Expect = 1e-75
 Identities = 184/645 (28%), Positives = 308/645 (47%), Gaps = 35/645 (5%)

Query: 13  KGRIYASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVKSRYEA 72
           K R+  S +  V I++ VL +I+   ++   ID+   E     N     +  W++ R  A
Sbjct: 6   KTRLLFSSLFAVFITVAVLVSISSYVIRNHAIDNTQGEIDQLANTFAEGIGLWMQDRKTA 65

Query: 73  VSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAY---EDGRSYMSMDKEGGVTTNRF 129
           ++         +    N+     L +A         Y   E G  Y    ++  + T  +
Sbjct: 66  ITS----LKKTVEADPNVQITPYLLQAHNAMGFALTYFGDEQGNMYR---QDPALNTANY 118

Query: 130 KFTDRDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLDDIIT 189
              +R WY  AK+  +  +T  Y      K+V++   P++  G+  G    +  +D +  
Sbjct: 119 DPRERPWYMDAKAANAMVMTAPYVSATLKKQVVTIAEPVMVSGRLFGVAAANLTIDQLTD 178

Query: 190 QVSNMRFAGGAATLTDKNAVFFASDDPN------DIGRTPSQVSPSFREMEAGFHRQESG 243
            V  +   G   TL    A    S  PN       + +  S  +PS+    A  +  E  
Sbjct: 179 AVQRLEVPGKGYTLMVDTAGLIISH-PNTQLNNQQLTKIDSHFTPSWLSQRANANTMEER 237

Query: 244 HLSFPYLGIEFDG-----YYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVL 298
                    E DG     Y   V  TD   W L+  ++K   ++            G+ L
Sbjct: 238 ---------ELDGGTQLVYVAAVPSTD---WALIFVMNKQEIMSQATSLAWWMSAVGVGL 285

Query: 299 IGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEV-NGNDDLAQISEGFNRFS 357
           + I   V++ I    +K L R+ +A+ D+A+G GDLT R+   N +D++  ++ GFNRF 
Sbjct: 286 LVIFGLVLVAIFKMQFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFV 345

Query: 358 GNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVA 417
             L  M+ ++ +    +    +  S +A +N Q +     E   V TA+T+M+ +   +A
Sbjct: 346 ERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIA 405

Query: 418 ESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLS 477
            +   + Q  + A   +      V  +  ++ +L N+V+     IS +N  + KI+ +L 
Sbjct: 406 SNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILL 465

Query: 478 VIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLE 537
            I  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT +ST EI  M+  L +
Sbjct: 466 TISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQ 525

Query: 538 GTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAE 597
                V +M ++    +T+    +  S SL  +S ++++I D+++QIA A E+Q++V +E
Sbjct: 526 TAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSE 585

Query: 598 LSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
           ++RN  SIRE+ E+L +  +  +  ++ L+H    L+Q V +FKL
Sbjct: 586 INRNTESIREVSENLSIEAQSAMVQSQELAHLAASLQQEVSRFKL 630