Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  226 bits (577), Expect = 2e-63
 Identities = 139/382 (36%), Positives = 220/382 (57%), Gaps = 2/382 (0%)

Query: 263 LTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIGISVGVII-FIINQIYKPLLRLK 321
           +T D+    M  + +A   A  +V+        I+LI I +   I  I+ Q     +R  
Sbjct: 272 MTSDLQDNTMKSLSEAGDKAAKEVSQKITFINIILLIAILLSAFITVIVTQSLLRTIREV 331

Query: 322 VAVL-DLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQ 380
           VA+L ++A G  DLT+RL VNG+D+L Q+++ FNRF   +Q ++ ++ D T  + S+  Q
Sbjct: 332 VALLNEIADGEADLTQRLPVNGHDELTQLAKNFNRFVLRIQQLVAEVKDTTVQMVSASTQ 391

Query: 381 LSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVI 440
           L+       Q + S  +ET  V +AIT+M+ SA  VA S   +N+++E A  +A      
Sbjct: 392 LNSVTHSATQDMSSQQNETQLVASAITEMAASAVEVAASADTANKLSEDAKAQALLGRET 451

Query: 441 VNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEAARA 500
           V  A  ++  L + VE  + +I  +  D++KI  VL VI AI+EQTNLLALNAAIEAARA
Sbjct: 452 VTRATHSMRELASKVEASATTIEQLRNDSDKIGAVLDVIRAIAEQTNLLALNAAIEAARA 511

Query: 501 GEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKT 560
           GEQGRGFAVVADEVR+LA+RTQ ST +I  ++  L + + S    M ++++   +T ++ 
Sbjct: 512 GEQGRGFAVVADEVRSLASRTQESTKQIQQIIQTLQDRSGSAATMMGQSREATNSTVEQV 571

Query: 561 SEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTV 620
           ++V  +L+ ++  V  I    +Q+A A EQQSTV  E++ ++ S+ +     +   +Q  
Sbjct: 572 TQVESALSTITEMVMSITHSVSQMAHAAEQQSTVVEEINMSINSVNDSANRTLTGVKQAA 631

Query: 621 GATESLSHSNHELEQLVGKFKL 642
            +   L     +L+ LV +FK+
Sbjct: 632 SSANGLLGIGQQLDGLVSEFKV 653