Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  221 bits (562), Expect = 1e-61
 Identities = 192/693 (27%), Positives = 318/693 (45%), Gaps = 71/693 (10%)

Query: 16  IYASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVKSRYEAVSR 75
           ++ S+V +++ISL    +     L  ++ ++L TET++KL     E    V        R
Sbjct: 17  LFLSIVAILSISLWWTLSDQNTELSNQVQETLQTETRDKLEARAGEYGEMVAGFINEAYR 76

Query: 76  GANLFTPELSDTDN---LNKVRL-LAEAA------QITNVIAAYE----DGRS------- 114
               F+  L  T     L + RL LA AA      QI+++ A +E    DG         
Sbjct: 77  IPYSFSGMLESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQFEPNGYDGLDSEFLNVE 136

Query: 115 -------------YMSMDKEGGV--------------TTNRFKFTDRDWYQQAKSRRSPF 147
                        Y + + +G V              T N F   + +WY  AK    P 
Sbjct: 137 VSHSVASSGSLEVYYTRNDDGTVEHNQVDDSAEKYVTTLNEFGIREAEWYLCAKETLKPC 196

Query: 148 LTEIYQDQVT---GKKVISAVSPILHQGQFVGALLGDFQL---DDIITQVSNMRFAGGAA 201
           L E Y  ++T      + S   P++   QF+G +  D  L     +I ++S   + G A 
Sbjct: 197 LMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQALIDKLSKSLYDGQAK 256

Query: 202 T--LTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQESGHLSFPYLGIEFDGYYK 259
              L+ +  V  AS            + P         H+      +   + +    Y  
Sbjct: 257 VTLLSTRGLVVAASHYSKKARPLSESIDPKLASQIVALHKNGGYMANDDEIIV---AYPI 313

Query: 260 RVNLTDDMYWTLMVFVDKATA------LADVDVAVANAITTGIVLIGISVGV-----IIF 308
           ++ L     W+L + V KA A      L D    +A ++ + ++++G++V +     I  
Sbjct: 314 KIPLAK-AEWSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGLAVSILAVVTISI 372

Query: 309 IINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQIS 368
           +I  I  PL  ++  V  LA   GDLT+ + V+ + +L  + +GFN F   L++++ ++ 
Sbjct: 373 VIRSIIAPLKMIQGRVEHLASADGDLTQSIVVDAHAELIALGKGFNSFIHKLKDLISELK 432

Query: 369 DATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITE 428
                        +Q A+     +     E + VVTA+ +MS +A  VA++  Q+   TE
Sbjct: 433 TLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEVAKASEQTAAETE 492

Query: 429 AASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNL 488
           A S+  + S   +  A+  VT++  +      ++S +   +  IS +L VI +I+ QTNL
Sbjct: 493 AMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNL 552

Query: 489 LALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMER 548
           LALNAAIEAARAGEQGRGFAVVADEVRALA++TQ+ST +IS ++  L +  +S  G +++
Sbjct: 553 LALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQQEVNSASGIIDK 612

Query: 549 TKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREI 608
             ++ Q    +T +   SLN M + + +I    T IAAA E+QS V  E++RN+  I + 
Sbjct: 613 GAERAQMAVSQTEQALTSLNSMVSQIEEISSQVTHIAAAAEEQSAVTEEVNRNITGISDS 672

Query: 609 VESLVVSGRQTVGATESLSHSNHELEQLVGKFK 641
              L     +   ++  L+    +  Q +GK K
Sbjct: 673 ASELARLAGEAQQSSVVLAELVKQQHQQLGKLK 705