Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  258 bits (660), Expect = 4e-73
 Identities = 182/648 (28%), Positives = 312/648 (48%), Gaps = 41/648 (6%)

Query: 13  KGRIYASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVKSRYEA 72
           K R+  S +  V I++ VL +I+   ++   +++   E     N     +  W++ R  A
Sbjct: 6   KTRLLFSSLFAVLITVAVLVSISSYFIRNNALENTQHEIDQLANTFAEGIGLWMQDRKMA 65

Query: 73  VSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSM---DKEGGV----- 124
           ++              +L K      + QIT  +    +G  +      D++G +     
Sbjct: 66  IT--------------SLKKTIEADPSVQITPYLLQAHNGMGFALTYFGDEQGNMYRQDP 111

Query: 125 --TTNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDF 182
                 +    R WY  AK+  +  +T  Y      K+V++   P+   G   G    + 
Sbjct: 112 ALNVANYDPRIRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVTVSGSLFGVAAANL 171

Query: 183 QLDDIITQVSNMRFAG-GAATLTDKNAVFFASD----DPNDIGRTPSQVSPSFREMEAGF 237
            +D +   V  ++  G G   + DK  +  +      +   + +  +  +PS+    A  
Sbjct: 172 TIDQLTDAVQRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANA 231

Query: 238 HRQESGHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAV--ANAITTG 295
           +  E   L      I    Y   V  TD   W L+  ++K   ++         +A+  G
Sbjct: 232 NTLEERELDGETQLI----YVAAVPSTD---WELVFVMNKDEIMSQATTLAWWMSAVGAG 284

Query: 296 IVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEV-NGNDDLAQISEGFN 354
           +++I   V V IF I   +K L R+ +A+ D+A+G GDLT R+   N +D++  ++ GFN
Sbjct: 285 LLVIFGLVLVAIFKIQ--FKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFN 342

Query: 355 RFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESAR 414
           RF   L  M+ ++      +    +  S +A +N Q +     E   V TA+T+M+ +  
Sbjct: 343 RFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATE 402

Query: 415 TVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISE 474
            +A +   + Q  + A   +      V  +  ++ +L N+VE     IS +N  + KI+ 
Sbjct: 403 EIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINS 462

Query: 475 VLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTK 534
           +L  I  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT +ST EI  M+  
Sbjct: 463 ILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIET 522

Query: 535 LLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTV 594
           L +     V +M ++    +T+    +  S SL  +S ++++I D+++QIA A E+Q++V
Sbjct: 523 LQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSV 582

Query: 595 AAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
            +E++RN  SIRE+ E+L +  + ++   + L+H    L+Q VG+FKL
Sbjct: 583 TSEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRFKL 630