Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  234 bits (597), Expect = 9e-66
 Identities = 144/460 (31%), Positives = 237/460 (51%), Gaps = 4/460 (0%)

Query: 184 LDDIITQVSNMRFAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQES 242
           LDD++  + + +    G   L D         D + IG++  +   S   + +  +R + 
Sbjct: 182 LDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSDF 241

Query: 243 GHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIGIS 302
             +     G   +  +   +    M W L+  V +A   A +  A    +   +++    
Sbjct: 242 NLIDTQIQG---ENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGF 298

Query: 303 VGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQN 362
           + + I +   + +P+ ++     D+ +G GDL +RL V G D++AQ+++GFN F   +Q+
Sbjct: 299 IMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQD 358

Query: 363 MMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQ 422
            +++++  ++ +  S + +S  A++  +        T  VVTAI +M  +   +A +  Q
Sbjct: 359 SVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQ 418

Query: 423 SNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAI 482
           +    + A  E+    V+V  A  T+  L  DVE + E I ++      I  +L VI AI
Sbjct: 419 AAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAI 478

Query: 483 SEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSV 542
           SEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RT  ST E+  M+ KL       
Sbjct: 479 SEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRA 538

Query: 543 VGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNM 602
           V AM +++ +         E S SL  +S  +  I D++ Q+AAATE+QSTV  +++RN+
Sbjct: 539 VNAMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNV 598

Query: 603 LSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
             I EI +    + +    A+ +L+   H L+ LV KFK+
Sbjct: 599 TEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 638