Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., multidrug resistance protein D (RefSeq) from Shewanella amazonensis SB2B

 Score =  429 bits (1103), Expect = e-125
 Identities = 223/377 (59%), Positives = 276/377 (73%), Gaps = 8/377 (2%)

Query: 1   MKTKPSLWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIW 60
           MKTKPSLWLM+++LMFPQIVET+YSP L SI+++F+VSD +A+QTLS+YF+AFALGV +W
Sbjct: 1   MKTKPSLWLMLLLLMFPQIVETLYSPALVSISQAFAVSDTEASQTLSIYFIAFALGVAVW 60

Query: 61  GVLADKWGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRD 120
           G++AD WGRRPTML+GL +YG +  +A+QTDSF +LMLAR  SAFGIAVGS+VTQT+LRD
Sbjct: 61  GIVADAWGRRPTMLLGLSVYGISALVALQTDSFAVLMLARACSAFGIAVGSIVTQTMLRD 120

Query: 121 VFSGHELRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQL 180
            F G  L KVFSLMG+GI++SPV+GM  GGQL   GGH  VF  L F+ALVL    +  L
Sbjct: 121 SFDGDALGKVFSLMGLGIALSPVIGMFTGGQLVLLGGHGAVFTLLLFMALVLLGCCVRFL 180

Query: 181 PE--------TQQVKPKIALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLGAFIFSD 232
           PE        TQ       L  L  RM  D  +  SALLVA+YN+ LFSYYQLG F F+ 
Sbjct: 181 PETFPETVTRTQGTNQSFPLSALAKRMLADWHIWRSALLVAIYNIGLFSYYQLGGFAFAR 240

Query: 233 LGLDAEQFGYSGIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLDS 292
           LGL  E FGYSG+ LGLGS +GS+LN  L+A +V  +  LL AA LL++G + + L   S
Sbjct: 241 LGLTPEVFGYSGLLLGLGSCVGSYLNSRLIANEVSLQRRLLGAATLLLLGAVSLCLLQGS 300

Query: 293 IGFVAAMILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQR 352
           + FV  M LVV+A+G+AIPN+LS AL +YK  AGSAGAL GL+YYLLIG+GLAL GL++ 
Sbjct: 301 VWFVLPMCLVVMAFGVAIPNVLSMALSDYKMYAGSAGALLGLMYYLLIGAGLALAGLIEH 360

Query: 353 LGVVLLMCAGITLLATL 369
           LG VLL CA      TL
Sbjct: 361 LGWVLLGCAVAAWAVTL 377