Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella amazonensis SB2B

 Score =  117 bits (294), Expect = 5e-31
 Identities = 88/369 (23%), Positives = 165/369 (44%), Gaps = 16/369 (4%)

Query: 10  MVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWGR 69
           + ++ M   +   +Y P    I  S + S +  A TL+ +    A+G + +G L DK+G+
Sbjct: 18  LALLSMLGFLATDMYLPAFNQIESSLNTSASLVAMTLTCFLGGLAIGQLAYGSLCDKFGK 77

Query: 70  RPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELRK 129
           R T++ GL ++  ++ +   T++ ++  + RV  AFG    +V+ Q ++ + F   E RK
Sbjct: 78  RNTLMAGLGVFAVSSILLGFTENISVFFVLRVIQAFGACSAAVIWQALVMEKFDEGEARK 137

Query: 130 VFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQ---QV 186
           VFS +   +++SP L  L+G  ++   G + +F+ L  + L+L         E++   Q 
Sbjct: 138 VFSSIMPLVALSPALAPLMGAWVSEQFGWRAIFIILAIVGLLLAAMTPALAKESRTRSQS 197

Query: 187 KPKIALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLGAFIFSDLGLDAEQFGYSGIA 246
           +P +    L  R F++   +  A      + A F Y  L   +    G  A + G S I 
Sbjct: 198 EPILVKNILKNRAFQNNVAIFGAC-----SAAFFCYLTLWPAVMQHHGYAAAEIGLSFIP 252

Query: 247 LGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLDSIGFVAAM-ILVVIA 305
             L  ++G F  K  L    P+    +L    +++  +   LT    G +A + +   +A
Sbjct: 253 QTLAFMLGGFACKKALHSHSPEAIKNMLITGFVVLSLVLFLLTQLGAGILAVLWVFAALA 312

Query: 306 --YGMAIPNILSTALVEYKSQAGSAGA-----LFGLLYYLLIGSGLALTGLVQRLGVVLL 358
              G   P +++ AL  + + A  A         G+ +       L      + +G  +L
Sbjct: 313 AINGAVYPLLVTDALAPFSNNATKAAGWQNFLQLGMAFIASAAVALIAHWFEKAIGTGIL 372

Query: 359 MCAGITLLA 367
           +CA I L+A
Sbjct: 373 VCAAIVLVA 381