Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., multidrug effflux MFS transporter from Rahnella sp. WP5

 Score =  119 bits (298), Expect = 1e-31
 Identities = 93/365 (25%), Positives = 172/365 (47%), Gaps = 17/365 (4%)

Query: 23  IYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWGRRPTMLVGLLIYGS 82
           +Y P L  +A   + S A A  +L+   L    G +++G L+D++GR   +L  L +  +
Sbjct: 29  LYLPALPEMAGDLNTSTASAQLSLTAGLLGLGFGQLLFGPLSDRYGRMRPLLWSLALLLA 88

Query: 83  ATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELRKVFSLMGIGISISP 142
           A+         + L++AR+      A G+V+++ + RD+++GHEL + F+L+ +   ++P
Sbjct: 89  ASVWCAVAQDISQLIVARLLQGIAGAGGAVLSRAVARDLYNGHELTRFFALLMLVNGLAP 148

Query: 143 VLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQQVKPKIALGCL-----VA 197
           ++  +LGG +      + +F  L FIA++LF ++  +L ET   + +   G       V 
Sbjct: 149 IIAPVLGGAMLHWVNWRGIFGVLAFIAILLFSFSSLKLHETLTPERRSGGGIFSMLGSVF 208

Query: 198 RMFKDRQVLLSALLVALYNVALFSYYQLGAFIFSDL-GLDAEQFGYSGIALGLGSLIGSF 256
            + K R  +   L        +F+Y     F+   +  L  + F       G+G +I + 
Sbjct: 209 SLLKHRPFMGLCLTQGFIMAGMFAYIGASPFVLQQIYHLSPQMFSLCFAINGIGLVISAQ 268

Query: 257 LNKTLLAKQVPQRAL----LLLAALLLIMGTIGVSLTLDSIGFVAAMILVVIAYGMAIPN 312
           ++ T L+++  + AL    L +AA+  +   I  SL    +  +  +   V+  G+  PN
Sbjct: 269 VS-TRLSRRFGEMALVKAGLCIAAVASVALVISASLNAPLVMLLVPLFFSVMVIGIISPN 327

Query: 313 ILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGL----VQRLGVVLLMCAGITLL-- 366
             S A+      AGSA AL G+  + L    + +TG        +G+ +L C  I +L  
Sbjct: 328 AGSLAMQSQGKNAGSASALLGVCMFALGAVAVPVTGFGSHPALSMGLTILGCYAIAILMF 387

Query: 367 ATLAR 371
            TL R
Sbjct: 388 VTLVR 392