Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (269), Expect = 4e-28
 Identities = 87/367 (23%), Positives = 165/367 (44%), Gaps = 34/367 (9%)

Query: 10  MVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWGR 69
           + ++ M   I   +Y P   +I  S   S  Q A +L+ +    ALG +++G L    G+
Sbjct: 13  LALLSMLGFIATDMYLPAFKAIETSLDASATQVASSLTFFLAGLALGQLLYGPLVQAIGK 72

Query: 70  RPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELRK 129
           R ++++GL+++G+A+ +   +DS  +  +AR F A G    SV+ Q I+ D +   E ++
Sbjct: 73  RLSLVLGLVLFGAASLVIANSDSIAMFNVARFFQALGACSASVIWQAIVIDRYKASEAQQ 132

Query: 130 VFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQ----- 184
           VFS +   +++SP L  +LG  L        +F  L  ++L+L +  L  +   +     
Sbjct: 133 VFSNIMPLVALSPALAPILGAYLLEWQQWHSIFFILGGLSLLLILATLAWVESKESLNSK 192

Query: 185 -------------QVKPKIALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLGAFIFS 231
                        QV+  + +  L   M    + L + L+    + A FSY  L   +  
Sbjct: 193 ADEAISQQGSTDTQVQKSVRVSYLA--MLASPRYLGNVLIFGACSAAFFSYLTLWPIVME 250

Query: 232 DLGLDAEQFGYSGIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLD 291
             G +A+  G S I   +  ++G +L+K  + +     A + L  +LL+ G     + L 
Sbjct: 251 QHGYEAKAIGLSFIPQTVMFILGGYLSKLFIRR---LGAEVTLTWVLLLFGACVAGIALV 307

Query: 292 SIGFVAAMI--------LVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSG 343
           ++ + ++ I        ++  A G   P ++++AL  +K  +  A    GL  +L I   
Sbjct: 308 TLCYPSSTIWPLLSIFSVMAAANGACYPIVVNSALQVFKQASAKAA---GLQNFLQISIA 364

Query: 344 LALTGLV 350
              + LV
Sbjct: 365 FGASSLV 371