Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  120 bits (301), Expect = 7e-32
 Identities = 92/361 (25%), Positives = 173/361 (47%), Gaps = 25/361 (6%)

Query: 9   LMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWG 68
           LM ++L+ P  ++ IY P + ++A  F+VS ++   TL ++  A  +G ++ G LAD++G
Sbjct: 9   LMSLVLLSPLAID-IYLPSMPTMAAEFAVSASEVQSTLVLFLFAMGVGQILIGPLADRYG 67

Query: 69  RRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELR 128
           RRP  L G+L+YG+++ +A     F  L +ARV         S+V  + +RD +S  E  
Sbjct: 68  RRPVALFGVLLYGASSLLAAAAIEFHWLQIARVLQGLAACSTSIVVFSAVRDCYSPKEGA 127

Query: 129 KVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQQVKP 188
           K++S +   I + P L   LGG LA   G +  F+ +   A+++ +    +LPET+    
Sbjct: 128 KIYSYLNGAICVIPALAPTLGGLLAMQFGWRSTFVFMTLYAILMMLLVGYRLPETRPAN- 186

Query: 189 KIALGCL-----VARMFKDRQVLLSALLVALYNVALFSYYQLG-AFIFSDLGLDAEQFGY 242
            ++ G L        +  +   L  A        A+ SY      ++   LG+   +  +
Sbjct: 187 TVSTGPLYRWSRYKPVLSNTHFLFYAFACMSAMAAILSYVSYSPVWLIGHLGV--SELAF 244

Query: 243 SGIALGLGSLIG--SFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLT---------LD 291
           SG+  GL +L+   +     ++ +++  R   +LA  LL++  + +              
Sbjct: 245 SGL-FGLNALVNIVACFAAPVVIRKLGNRPTAILALALLVLSAVFIIAAQAFGPSAGMAA 303

Query: 292 SIGFVAAMILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQ 351
           +  F+  M+L+ I +   +    S AL  +  +AG+A A+ G   ++ +     + GLVQ
Sbjct: 304 AFAFMLPMMLLCIGFAFLLGPATSMALSAFGERAGTATAMLG---FIQMSGASVIAGLVQ 360

Query: 352 R 352
           +
Sbjct: 361 Q 361