Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 97/382 (25%), Positives = 170/382 (44%), Gaps = 24/382 (6%)

Query: 12  IMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWGRRP 71
           ++LM+P  ++ +Y   L  IA     S+AQ     SVY    A  ++  G LAD+ GR+P
Sbjct: 11  LVLMYPTGID-MYLVGLPQIASQLGASEAQLHIAFSVYLAGMATTMLFAGSLADRIGRKP 69

Query: 72  TMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELRKVF 131
             L G L++  A++ A  + +  + ++AR     G     VV   ILRDV       KV 
Sbjct: 70  ITLFGALLFALASYFAAGSQTSDLFLIARFAQGIGAGCCYVVAFAILRDVLDDKRRAKVL 129

Query: 132 SLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQQVKP--K 189
           S++     I PV+  ++G  +        +F  +  + L++F   L  L ET        
Sbjct: 130 SMVNGVTCIIPVIAPVIGHLIMLKFPWPSLFYTMAAMGLLVFALCLLVLRETHSKAAFHT 189

Query: 190 IALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLG-AFIFSDLGLDAEQFGYSGIALG 248
            AL  +    FK    +   ++  L    + SY  +    I   +G D  Q+  +   + 
Sbjct: 190 QALPGVQRESFKQGFFISRLVITTLGVTTILSYVNVSPMLIMGQMGFDRGQYSNTMAMMA 249

Query: 249 LGSLIGSFLNKTLLAKQVPQRALLLL-------AALLLIMGTI-GVSLTLDSIGFVAAMI 300
           L S++ SF    LL  +  +++L+L        AAL+ I+  + GVS + + +GF     
Sbjct: 250 LVSMLASFSTPFLL-NRFKEKSLILFSQGLFVAAALVFILTQLGGVSHSFNLLGFAFVCS 308

Query: 301 LVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGL--VQRLGVVLL 358
              I +G+     +S AL  + ++AG A +L G+         + + GL  V  + ++LL
Sbjct: 309 GFSIGFGVT----MSQALSPFVARAGVASSLLGIAQVCTSALYIWVMGLLEVSAINILLL 364

Query: 359 MCA-----GITLLATLARSSHI 375
           + +      ITL+  + + S +
Sbjct: 365 ILSVGALVSITLMLAVPKMSEM 386