Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  344 bits (883), Expect = 2e-99
 Identities = 182/379 (48%), Positives = 257/379 (67%), Gaps = 7/379 (1%)

Query: 1   MKTKPSLWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIW 60
           M  KP LWL V+++MFPQI+ETIYSP L  IA  F+V  + AAQTLSVYF+AFA+GV  W
Sbjct: 1   MNIKPPLWLAVLLMMFPQIMETIYSPALPDIAEHFAVPISAAAQTLSVYFVAFAIGVFCW 60

Query: 61  GVLADKWGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRD 120
           G LAD  GRR  ML GL+ Y   +  A+    F++L++ARV SAFG AVGSV+TQT++RD
Sbjct: 61  GRLADVIGRRKAMLAGLVCYAIGSAFALLVSDFSLLLMARVLSAFGAAVGSVITQTMMRD 120

Query: 121 VFSGHELRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQL 180
            +SG EL KVFS+MG+   ISPV+G+LLG  L+   G+Q VF+ L   A+VL   ++  L
Sbjct: 121 SYSGEELAKVFSVMGMSFGISPVIGLLLGSVLSAFWGYQGVFVVLMSSAIVLLFLSVKSL 180

Query: 181 PETQQVKPK-IALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLGAFIFSDLGLDAEQ 239
           PET+    + IA+G L  +M  DR ++ + LLVA +N+  FSY+ L  F+F   GL    
Sbjct: 181 PETKPAHTQTIAIGELAIKMLSDRGIIKNTLLVAAFNLMWFSYFSLAPFMFEAQGLSTLI 240

Query: 240 FGYSGIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLT------LDSI 293
           FG SG+ LG G+ +GS+ N+ LL +      L+ LA+ + ++G +G+ L       L+++
Sbjct: 241 FGMSGLLLGFGAFLGSYFNQVLLGRCCTSPRLIRLASSIALVGGVGIWLLQSTFIGLNNV 300

Query: 294 GFVAAMILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQRL 353
            F+A M+L+VIAYG+AIPNILS+AL  Y++ AGSAGALFGL YY+L+G+GL + GL+  L
Sbjct: 301 YFLAPMLLIVIAYGIAIPNILSSALAGYRTYAGSAGALFGLFYYILLGAGLGVVGLINHL 360

Query: 354 GVVLLMCAGITLLATLARS 372
           G V+ + A    + +++R+
Sbjct: 361 GGVITLAALFCTVLSMSRA 379