Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug resistance protein D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 3e-27
 Identities = 113/388 (29%), Positives = 178/388 (45%), Gaps = 30/388 (7%)

Query: 7   LWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADK 66
           L+++V M+   Q+ +TI+ P L  IA+  +V  ++    ++ Y LA+ L   I+G L+D+
Sbjct: 26  LFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLFQFIYGPLSDR 85

Query: 67  WGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHE 126
           +GR+  +L+G+ I+     +A Q  SF  L+ A +    G A    + ++I RD + G  
Sbjct: 86  YGRKLPLLIGIGIFIIGALLATQATSFNQLICASLLQGLGTASAGALCRSIPRDHYFGDN 145

Query: 127 LRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALF----FIALVL-FVYNLCQLP 181
           L K  S + + +   P++   LG   +   G Q V+  LF    F+ L+L F +      
Sbjct: 146 LLKFNSYVSMAVVFLPLVAPFLGSLASAYFGWQAVYWVLFGFGVFVWLLLCFGFKESLPK 205

Query: 182 ETQQVKPKIALGCLVARMFKDRQVLLS--------ALLVALYNVALFSYYQLGAFIFSDL 233
           + ++ +P +A    V R    R  L S        A   A+  V    Y QL  F+ S  
Sbjct: 206 DKREQQPVLASYRHVLRHRSFRAYLFSLIATFAGIAAFEAIAGVLYGQYLQLTPFMVSCY 265

Query: 234 GLDAEQFGYSGIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLDSI 293
            + A   GY      LG+LI     +   A++   + + LL A  L M   G+   +   
Sbjct: 266 FV-APIPGYL-----LGALIA---GRQKQAQRSVFQGVALLGAGALFMLIPGLFQLVVGW 316

Query: 294 GFVAAMILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGL-ALTGLVQR 352
             +   IL     GM  P + S AL  +  QAG AGAL G L     G+GL ALT  +  
Sbjct: 317 SLLVGSILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGGLQN--FGAGLAALTMSLVP 374

Query: 353 LGVVL---LMCAGITLLATLARSSHIAR 377
           +G  L   L+ A + LL  +A   H AR
Sbjct: 375 MGGQLSIGLLSAVMVLLVIVA--LHYAR 400