Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (296), Expect = 3e-31
 Identities = 90/382 (23%), Positives = 175/382 (45%), Gaps = 22/382 (5%)

Query: 7   LWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADK 66
           L  + ++ M   I   +Y P   +I  S + S +Q A +L+ +    ALG +I+G L  K
Sbjct: 17  LLYLALLSMLGFIATDMYLPAFKAIESSLNSSPSQVAMSLTCFLAGLALGQLIYGPLVSK 76

Query: 67  WGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHE 126
            G+R  +L+GL ++  ++     +DS  +L +AR F A G     V+ Q I+ + +   +
Sbjct: 77  LGKRYALLIGLAVFALSSVAIANSDSVMMLNIARFFQAIGACSAGVIWQAIVVEQYDAEK 136

Query: 127 LRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLP---ET 183
            + +FS +   +++SP L  +LG  +    G + +F++L  IA +L +  L  +P   + 
Sbjct: 137 AQGIFSNIMPLVALSPALAPILGAYILNEFGWRAIFISLCVIAFLLVLMTLYFVPGKSKH 196

Query: 184 QQVKPKIALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLGAFIFSDLGLDAEQFGYS 243
           Q +KP         ++ K+ + L + ++    + A F+Y  +   +    G  A + G S
Sbjct: 197 QDIKPS---AVSYGQILKNTRYLGNVVIFGACSGAFFAYLTVWPIVMEQHGYQATEIGLS 253

Query: 244 GIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLDSIGFVAAMI--- 300
            I   +  ++G + +K L+ +    +    L  LL I G   VS+ L ++ F    I   
Sbjct: 254 FIPQTIMFIVGGYASKLLIKRIGADKT---LNVLLSIFGICVVSIVLFTLLFKTITIFPL 310

Query: 301 -----LVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQRLGV 355
                ++  A G   P ++++AL ++   A  A  L   L   +     +L  +    G 
Sbjct: 311 LISFSILAAANGAIYPIVVNSALQQFTQHASKAAGLQNFLQITIAFGASSLVAMWANFGE 370

Query: 356 V-----LLMCAGITLLATLARS 372
           V     +L C+ + +L  + ++
Sbjct: 371 VAIGWGILCCSLLVILGYVLKT 392