Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., multidrug transporter EmrD from Klebsiella michiganensis M5al

 Score =  124 bits (310), Expect = 6e-33
 Identities = 115/392 (29%), Positives = 188/392 (47%), Gaps = 27/392 (6%)

Query: 7   LWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADK 66
           L ++V+++   Q+ +TIY P +  +A S +V +      ++ Y L + +  + +G L+D+
Sbjct: 10  LLMLVLLVAVGQMAQTIYIPAIADMAVSLNVREGAVQSVMAAYLLTYGVSQLFYGPLSDR 69

Query: 67  WGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHE 126
            GRRP +LVG+ I+  AT +A+ T S  +L+ A      G  VG V+ +T+ RD++ G +
Sbjct: 70  VGRRPVILVGMSIFMLATLVAITTHSLPVLIAASAMQGMGTGVGGVMARTLPRDLYEGAQ 129

Query: 127 LRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQQV 186
           LR   SL+ +GI +SP+L  L+GG L      +  F+ L  +   +       +PET+  
Sbjct: 130 LRHANSLLNMGILVSPLLAPLIGGILDTLWNWRACFVFLLVLCAGVTFSMARWMPETRPT 189

Query: 187 -KPKIALGCLVARMFKDR--QVLLSALLVALYNVALFSYYQLGAFIFSDLGLDAEQFGYS 243
             P+  L      +F        L  L+  L  +A+F     G  + + LGL +      
Sbjct: 190 GAPRTRLITNYKTLFGTGAFNCYLLMLIGGLAGIAVFEACS-GVLMGAVLGLSSMSVSIL 248

Query: 244 GI----ALGLGSLIGSFLNK---TLLAKQVPQRALLLLAALLLIMGTIGVSLTLDSIGFV 296
            I    A   G+      NK   TL+ + V     LL   L+ I G +GV +T+ ++   
Sbjct: 249 FILPIPAAFFGAWFAGRPNKRFPTLMWQSV--ICCLLAGVLMWIPGLLGV-MTVWTLLVP 305

Query: 297 AAMILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLA--LTGLVQRLG 354
           AA  L     GM  P   S A+  +   AG+AGAL G L    IGSG+   L+ ++ + G
Sbjct: 306 AA--LFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQN--IGSGVLAWLSAMMPQTG 361

Query: 355 V----VLLMCAGITLL---ATLARSSHIARLP 379
                +L+M  G+ +L     LA   H  +LP
Sbjct: 362 QGSLGLLMMLMGLLILLCWLPLASRFHQHQLP 393