Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., multidrug efflux system protein MdtL (RefSeq) from Shewanella sp. ANA-3

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 88/364 (24%), Positives = 157/364 (43%), Gaps = 27/364 (7%)

Query: 12  IMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWGRRP 71
           ++LM+P  ++ +Y   L  IA     ++AQ     SVY    A  ++  G LAD+ GR+P
Sbjct: 11  LVLMYPTGID-MYLVGLPQIANQLGATEAQLHIAFSVYLAGMATTMLFAGSLADRIGRKP 69

Query: 72  TMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELRKVF 131
             L   L++  A++ A ++ S  + ++AR     G     VV   ILRD        KV 
Sbjct: 70  ITLFSALLFALASYFAARSQSSDLFLVARFVQGVGAGCCYVVAFAILRDALDDKRRAKVL 129

Query: 132 SLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPET-------Q 184
           S++     I PV+  ++G  +        +F  +  + L++F   L  L ET        
Sbjct: 130 SMVNGVTCIIPVIAPVIGHLIMLRFPWPSLFYTMAVMGLLVFGLCLFVLRETYSKASFHS 189

Query: 185 QVKPKIALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLG-AFIFSDLGLDAEQFGYS 243
           Q  P++         FK    +   ++  L    + SY  +    I   +G D  Q+  +
Sbjct: 190 QTLPRVQ-----TESFKQGFFISRVVITTLGVTTILSYVNVSPMLIMGQMGFDRGQYSNT 244

Query: 244 GIALGLGSLIGSFLNKTLLAKQVPQRALLLL-------AALLLIMGTIG-VSLTLDSIGF 295
                L S++ SF    LL  Q  +++L+L        AAL+ I+  +G +    + +GF
Sbjct: 245 MAMTALVSMLASFSTPFLL-NQFKEKSLILFSQTLFAAAALVFILTQLGWLGQLFNLLGF 303

Query: 296 VAAMILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQRLGV 355
                   I +G+     +S AL  + ++AG A +L G+         + + GL++   +
Sbjct: 304 GLVCSGFAIGFGVT----MSQALSPFVARAGVASSLLGIAQVCTSALYIWVMGLLEVSAI 359

Query: 356 VLLM 359
            +L+
Sbjct: 360 NILL 363