Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug resistance protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  102 bits (254), Expect = 2e-26
 Identities = 112/389 (28%), Positives = 179/389 (46%), Gaps = 32/389 (8%)

Query: 7   LWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADK 66
           L+++V M+   Q+ +TI+ P L  IA+  +V  ++    ++ Y LA+ L   I+G L+D+
Sbjct: 26  LFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLCQFIYGPLSDR 85

Query: 67  WGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHE 126
            GR+  +L+G+ I+     +A +  SF  L+ A +    G A    + ++I RD + G  
Sbjct: 86  VGRKMPLLIGIGIFILGALMAAEATSFNQLIFASLLQGLGTASAGALCRSIPRDHYFGDN 145

Query: 127 LRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLC-----QLP 181
           L +  S + + +   P++   LG   +   G Q V+  LF    ++++  LC      LP
Sbjct: 146 LVRFNSYVSMAVVFLPLVAPFLGSFASAYWGVQAVYWVLFGFGSLVWLL-LCFGFKESLP 204

Query: 182 E-TQQVKPKIALGCLVARMFKDRQVLLS--------ALLVALYNVALFSYYQLGAFIFSD 232
           +  ++ +P +A    V R    R  LLS        A   A+  V    Y QL  F+ S 
Sbjct: 205 KHKREQQPILASYRHVLRHRSFRAYLLSLIATFAGIAAFEAIAGVLYGQYLQLSPFMVSC 264

Query: 233 LGLDAEQFGYSGIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLDS 292
             + A   GY      LG+LI     +   A++   + + LL A  L M   G+   +  
Sbjct: 265 YFV-APIPGYL-----LGALIA---GRQKQAQRTVLQGVALLGAGALFMLIPGIFQLVVG 315

Query: 293 IGFVAAMILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGL-ALTGLVQ 351
              +   IL     GM  P + S AL  +  QAG AGAL G L     G+GL ALT  + 
Sbjct: 316 WSLLIGSILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGGLQN--FGAGLAALTMSLV 373

Query: 352 RLGVVL---LMCAGITLLATLARSSHIAR 377
            +G  L   L+ A + LL  +A   H AR
Sbjct: 374 PMGGQLSIGLLSALMVLLVIVA--LHYAR 400