Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

 Score = 99.8 bits (247), Expect = 5e-26
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 5/253 (1%)

Query: 6   QQTSFDP-DRLPACVVGIAADIGN-HDSGLHQHQKGQLLFAPQGCIRFALDDSICILPPT 63
           + TS D  D  P  VV I  D  + H   LH+H++ QLL+   G ++ +  D   ++PP 
Sbjct: 2   RNTSIDLLDATPRAVVAIGTDYPHGHLLPLHRHRRAQLLYGATGVMQVSTADGNWVVPPQ 61

Query: 64  KAVWIPSGTRHRAIMTNVVAYRSIYFDCHAFKCPD-HITMIEVNALLKALIDKMALWSWD 122
           +AVWIP G  H  +M   V+ RS+Y    A    D    +I V+ L++ L+ +    + D
Sbjct: 62  RAVWIPPGVAHEVLMLG-VSTRSLYIKPAAVTAMDARCQVISVSPLMRQLLMEAVELAPD 120

Query: 123 TPQESMNNT-TTLFWEEFYAAQRQTFHLPLPTNRRFKVFRKQLMQATFFAPDLVSLANSV 181
             +   +     L   E   +     HLPLP + R     +  ++        V  A  +
Sbjct: 121 YDEAGRDGALIDLLLHELARSAHLPLHLPLPKDPRLLGLCQGFLKHPNAHVSPVQWAAQL 180

Query: 182 GASSKTVTRLFKAETGMSYQEWKQQWRLLKAIELLSKETPVNQVSDWLGFSSDSAFIAFF 241
             S ++  RLF  +TG S+ +W+QQ  ++ A+  L+    V +++  LG+ S +AF   F
Sbjct: 181 HISLRSFNRLFSQQTGASFSQWRQQACVMSALSRLAVGDSVTRIALDLGYDSPAAFSTMF 240

Query: 242 KKQTGQTPLSFIK 254
           ++  G  P ++++
Sbjct: 241 RRVLGHAPSAWLE 253