Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 263 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 7/226 (3%)

Query: 34  HQHQKGQLLFAPQGCIRFALDDSICILPPTKAVWIPSGTRHRAIMTNVVAYRSIYFDCHA 93
           H+H   Q  +A  G +           PP + +WIP+   H+ + +     RS+Y   HA
Sbjct: 39  HRHDWVQFSYAISGVLGVHTAAGSFFAPPQRGIWIPADLEHQVVTSTRAEMRSLYVHRHA 98

Query: 94  FKCP---DHITMIEVNALLKALIDKMALWSWDTPQESMNNT--TTLFWEEFYAAQRQTFH 148
             CP   +   ++EV  L + LI        D PQ          +  ++        F 
Sbjct: 99  --CPWADERCRVLEVTPLARELIKVFCQLPVDYPQGDTQEQRLVQVLLDQLATLPEVGFS 156

Query: 149 LPLPTNRRFKVFRKQLMQATFFAPDLVSLANSVGASSKTVTRLFKAETGMSYQEWKQQWR 208
           LPLP + R      +L++       L + A  +G S KT+ RLF+ ETG+S++ W+Q+ R
Sbjct: 157 LPLPRHARLLGLCNELIEQPEQNVTLHAWAERLGTSEKTLMRLFQRETGLSFRAWRQRMR 216

Query: 209 LLKAIELLSKETPVNQVSDWLGFSSDSAFIAFFKKQTGQTPLSFIK 254
           LL ++  L +   V   +   G+ S SAFIA FK   G TP    K
Sbjct: 217 LLSSLGSLEQGDSVTSAALSCGYDSTSAFIAAFKGMFGFTPGELFK 262