Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  109 bits (272), Expect = 7e-29
 Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 2/218 (0%)

Query: 34  HQHQKGQLLFAPQGCIRFALDDSICILPPTKAVWIPSGTRHRAIMTNVVAYRSIYFDCHA 93
           H H   QL +A  G +R   +    + PP +A+ IP G  H  I +     RS+Y D   
Sbjct: 40  HNHPWAQLSYAISGVLRVHTERGRFLAPPQRAILIPPGLLHEVISSPQTEMRSLYIDQRV 99

Query: 94  FK-CPDHITMIEVNALLKALIDKMALWSWDTPQESMNNT-TTLFWEEFYAAQRQTFHLPL 151
               P H  ++ V+ LL+ LI        D  ++  +     +  ++  AA   ++ LP 
Sbjct: 100 VPWAPAHCQVLAVSPLLRELIRTFGTLPVDYDEQGADGRLAAVILDQLRAAPELSYSLPW 159

Query: 152 PTNRRFKVFRKQLMQATFFAPDLVSLANSVGASSKTVTRLFKAETGMSYQEWKQQWRLLK 211
           P + R +   + L +    +  L   +  +  S KT+TR F+ +TG+S++ W+Q+ RLL 
Sbjct: 160 PDDARLRGICEALYEQPDLSLSLAQWSERLHISEKTLTRQFQRDTGLSFRAWRQRLRLLS 219

Query: 212 AIELLSKETPVNQVSDWLGFSSDSAFIAFFKKQTGQTP 249
           A+ LL +  PV  V+   G+ S SAFIA F +Q G TP
Sbjct: 220 ALPLLERGQPVTDVALACGYESTSAFIAAFGQQFGTTP 257