Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., helix-turn-helix transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  111 bits (277), Expect = 2e-29
 Identities = 74/255 (29%), Positives = 121/255 (47%), Gaps = 8/255 (3%)

Query: 3   IIDQQTSFD---PDRL--PACVVGIA-ADIGNHDSGLHQHQKGQLLFAPQGCIRFALDDS 56
           + D  T+ D   PD +  P    G+A A IG+    +H H KGQ++   +G +   +D  
Sbjct: 4   LTDSSTASDWVEPDEVARPVVAYGMASAMIGSFQLDMHCHAKGQIMLVQRGALSCRVDGG 63

Query: 57  ICILPPTKAVWIPSGTRHRAIMTN-VVAYRSIYFDCHAFKCPDHITMIEVNALLKALIDK 115
           + I+PP  AVWIP G  H    T  +  Y +          P     + V  LL+ L+ +
Sbjct: 64  LWIVPPRSAVWIPGGALHAIRATGRLEGYSAFVAAGIDVGLPQRCCAVSVTPLLRELLFR 123

Query: 116 MALWSWDTPQESMNNTT-TLFWEEFYAAQRQTFHLPLPTNRRFKVFRKQLMQATFFAPDL 174
            A       Q++  +    +  +E  AA+ +  HLP+P++ R +     +M A      L
Sbjct: 124 AARLPLLYDQDAATSRLIAVLLDEIAAARIEDLHLPMPSDPRLRALADLMMAAPAERGSL 183

Query: 175 VSLANSVGASSKTVTRLFKAETGMSYQEWKQQWRLLKAIELLSKETPVNQVSDWLGFSSD 234
              A   G S +T+ RL   ETGMS+  W+QQ  ++ A++ L+    + QV+  LG+ S 
Sbjct: 184 EGWAARAGLSERTLGRLISRETGMSFGRWRQQLGVMLAVQWLAGGASIQQVAADLGYESV 243

Query: 235 SAFIAFFKKQTGQTP 249
            +F+  F+K  G +P
Sbjct: 244 PSFVTMFRKTLGTSP 258