Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  257 bits (657), Expect = 1e-73
 Identities = 125/255 (49%), Positives = 169/255 (66%), Gaps = 1/255 (0%)

Query: 1   MAIIDQQTSFDPDRLPACVVGIAADIGNHDSGLHQHQKGQLLFAPQGCIRFALDDSICIL 60
           MA I  +  F+PD L   V+GIAAD+G HDSG+H H K QLL+A  GC+RF+L D+  +L
Sbjct: 1   MAFIKPEQQFNPDALHNLVIGIAADMGKHDSGMHHHHKAQLLYASAGCMRFSLADTQVVL 60

Query: 61  PPTKAVWIPSGTRHRAIMTNVVAYRSIYFDCHAF-KCPDHITMIEVNALLKALIDKMALW 119
           PPT+A W+P+G  H   M NVVAYRS+YF+  A    P  +T+  VN LLKALID M+ W
Sbjct: 61  PPTRAAWLPAGVEHHVTMRNVVAYRSLYFEPEAVASLPSEVTIFHVNPLLKALIDTMSYW 120

Query: 120 SWDTPQESMNNTTTLFWEEFYAAQRQTFHLPLPTNRRFKVFRKQLMQATFFAPDLVSLAN 179
            W+ P+ S +N   LF EE   A+ +   LPLP ++R + + KQ++Q      +L  +A 
Sbjct: 121 PWNKPRYSQHNAFALFCEELENAKAENLALPLPQDKRLQTWLKQVLQQEMQPANLKEMAI 180

Query: 180 SVGASSKTVTRLFKAETGMSYQEWKQQWRLLKAIELLSKETPVNQVSDWLGFSSDSAFIA 239
            +GAS +T++R+F ++TGM+YQ W+QQWRLL AIE L+  T V Q    L FSSDSAFI+
Sbjct: 181 EIGASERTISRIFSSQTGMAYQAWRQQWRLLSAIEQLAAGTSVAQAGFNLQFSSDSAFIS 240

Query: 240 FFKKQTGQTPLSFIK 254
           FFK+ TG TP  + K
Sbjct: 241 FFKQYTGTTPAQYFK 255