Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 270 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  113 bits (283), Expect = 4e-30
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 34  HQHQKGQLLFAPQGCIRFALDDSICILPPTKAVWIPSGTRHRAIMTNVVAYRSIYFD-CH 92
           H H +GQLL+A +G +R   D+++ ++P T AVW+PSG RH+         R++Y D  +
Sbjct: 42  HSHPRGQLLWAAKGILRVQSDNAVWVVPSTHAVWLPSGCRHQINCETQAHLRNLYIDPSY 101

Query: 93  AFKCPD-HITMIEVNALLKALIDKMALWSWDTPQESMNNTTTLFWEEFYAAQRQTFHLPL 151
             +  D  + M+ +  L++ ++ K+   +   P +      +   +E  A      +L  
Sbjct: 102 RVRVQDTQVVMVTMTPLMREMVLKLCQDATMEPAKYFRLGLSAI-DELDALDSVNTYLNA 160

Query: 152 PTNRRFKVFRKQLMQATFFAPDLVSLANSVGASSKTVTRLFKAETGMSYQEWKQQWRLLK 211
            ++ R     + L++       L  LA S GAS +T+ RLFKAETG +Y++W+Q++RLL 
Sbjct: 161 GSDPRLGRVIQLLIKKPQAEYTLAELAQSAGASIRTIERLFKAETGQTYRQWRQRYRLLN 220

Query: 212 AIELLSKETPVNQVSDWLGFSSDSAFIAFFKKQTGQTPLSF 252
           ++E L++      V+  LG+ S S+F A FK   G TP  +
Sbjct: 221 SLERLTQGESTTSVAHSLGYLSVSSFSAAFKALFGCTPQEY 261