Pairwise Alignments

Query, 484 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 49.3 bits (116), Expect = 6e-10
 Identities = 71/249 (28%), Positives = 105/249 (42%), Gaps = 30/249 (12%)

Query: 259 VLLAFGAALRSLWLRYQEGRERRFILQLLTHELRTPITS----LGFTVESLRSQF-DELS 313
           V +A   +LR    R  E  +  FI   ++HELRTP+T+    LG  +  +  Q  DE  
Sbjct: 436 VTVAVDVSLR----RRMEQMKTEFI-STVSHELRTPLTAIRGALGMLIGGIAGQVSDEAR 490

Query: 314 P------KAQESLWRLMADHQRLAQLSETSRHYLSPSHDTMARHPAQLSDFIEHCIEGFE 367
           P      K  E L RL+ D   + +L      +    HD        LSD   +  + + 
Sbjct: 491 PLLGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYG-QDYG 549

Query: 368 VELHLKH-----DSILALPYYWLGLCVTNLLSNAKQHGVPPIRLTVSVV--AQTLRIEVE 420
           V L          S   L        + NLLSNA +H      +TV +    + L I V+
Sbjct: 550 VSLEFLDAPELTSSEATLDPDRFAQVMANLLSNAIKHSPAGGCVTVDLRRRGKLLEIGVQ 609

Query: 421 DCGEF--PSFYQRLCKRLSRHQDTHSRPNTDNMGVGLQLVRKLITQMGGKLVIRRHP--- 475
           D G     +F  R+ +R ++   + +R      G+GL + R L+ QM GK+     P   
Sbjct: 610 DRGPGIPEAFRSRIFERFAQADSSDARQR-GGTGLGLAITRSLVQQMHGKIGFDCQPDQG 668

Query: 476 TRCILELPL 484
           TR  L+LPL
Sbjct: 669 TRFWLQLPL 677