Pairwise Alignments

Query, 484 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 830 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 52.8 bits (125), Expect = 5e-11
 Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 37/255 (14%)

Query: 257 IGVLLAFGAALRSLWLRYQEGRERRF-ILQLLTHELRTPITSLGFTVESLRSQFDELS-P 314
           I  L    A LR+  L+ Q   E +  +L  ++HELRTP+ ++    + +R   D+ S  
Sbjct: 577 IDALKRVEAELRAATLQAQAASEAKGRLLSGISHELRTPLNAILGFAQLMRMDCDDSSQS 636

Query: 315 KAQESLWRLMADHQRLAQLSETSRHY--LSPSHDTMARHPAQLSDFIEHCIE-------- 364
           +A E L  ++   + L QL      +  L      +   P  +   +  C E        
Sbjct: 637 EAAEYLDEILLASRHLNQLLGEILEWSSLQKERPQLELQPVDVCSLMRECAELIALEVQQ 696

Query: 365 -GFEVELHLKHDSILALPY-YWLGLCVTNLLSNAKQHGVP--PIRLTVSVVAQTLRIEVE 420
            G +++L L  D +L L     L   + NLLSNA ++ VP   I L        +RI VE
Sbjct: 697 RGLQLDLSLPDDGLLVLAEPRRLRQVLLNLLSNAMKYNVPNGHISLRAETSPGHVRILVE 756

Query: 421 DCG---------EFPSFYQRLCKRLSRHQDTHSRPNTDNMGVGLQLVRKLITQMGGKLVI 471
           D G         +    +QRL +  S  Q T         G+GL L  +    M G+L +
Sbjct: 757 DTGLGIDQAQQAQVFEPFQRLGRENSMIQGT---------GIGLSLCLEFARLMNGQLGL 807

Query: 472 RRHP---TRCILELP 483
              P   +R  +ELP
Sbjct: 808 HSEPGVGSRFWIELP 822