Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  129 bits (325), Expect = 3e-35
 Identities = 88/214 (41%), Positives = 117/214 (54%), Gaps = 8/214 (3%)

Query: 10  RILLIEDDTLLGQGLRDYLHDHGYACEWVTQSQQV--EKHWFSTDLVILDRQLHDGDSLK 67
           RILL+EDD  LG+G+R  L   GY  +W+             S +L ILD  L   D L+
Sbjct: 2   RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRLDGLE 61

Query: 68  HLPHW-LMLKALPVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEAQLRPLGS 126
            L         +PV+VLTA+     RI GL AGA DY++KPF   EL AR+ A LR   +
Sbjct: 62  VLKRLRAAANPVPVLVLTARDATGDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSFN 121

Query: 127 SV---LSYADIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLNLIWGY 183
                L Y  I++D  N+ V +  TP+ L  KEF LL  LL  PGRV  RD L  +++G+
Sbjct: 122 RPEPSLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYGW 181

Query: 184 QYFPTTRTVDNHILHLRQK-LPQLDIETLRGVGY 216
                +  ++ HI HLR+K  P+L I T+RGVGY
Sbjct: 182 DEEVESNALEVHIHHLRKKFFPEL-IRTVRGVGY 214