Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  117 bits (293), Expect = 2e-31
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 13/222 (5%)

Query: 9   KRILLIEDDTLLGQGLRDYLHDHGYACEWVTQSQQVEKHWFST--DLVILDRQLHDGDSL 66
           +RILL+ED+  L + +R  L    +    V    Q  +   S   DL++LDR L DGD L
Sbjct: 14  RRILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSDGDGL 73

Query: 67  KHLPHWLML-KALPVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEAQLRPLG 125
                     K+LP +++TA+      + GL++GA DY++KPFS  EL AR++A LR   
Sbjct: 74  TLCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSA 133

Query: 126 SSV-----LSYADIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLNLI 180
                   L++ ++V+D   R V     P+ L  +EF LL  L Q+P +V+ R +LL  +
Sbjct: 134 QQAADQYALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLLEAV 193

Query: 181 WGYQYFPTTRTVDNHILHLRQKL---PQLD--IETLRGVGYR 217
           WGY Y     TV++HI  LR KL   P  +  ++T+ GVGY+
Sbjct: 194 WGYSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYK 235